Analysis of Protein Surface Patterns by Pocket Similarity Network

Title: Analysis of Protein Surface Patterns by Pocket Similarity Network

Volume: 15 Issue: 5

Author(s): Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang and Luonan Chen

Affiliation:

Keywords: Protein surface pattern, pocket similarity, complex network, functional genomics, systems biology

Abstract: In this work, in order to reveal protein surface patterns in a systems biology framework, we analyze the similarity among the surface cavities by investigating the features of the pocket similarity network such as the community structure, the small-world property, the scale-free characteristic, and the hubs.

Cite this article as:

Liu Zhi-Ping, Wu Ling-Yun, Wang Yong, Zhang Xiang-Sun and Chen Luonan, Analysis of Protein Surface Patterns by Pocket Similarity Network, Protein & Peptide Letters 2008; 15 (5) . https://dx.doi.org/10.2174/092986608784567474