Current Bioinformatics


Quan Zou
Institute of Fundamental and Frontier Sciences
University of Electronic Science and Technology of China

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Open Access Articles

Identification of Novel Key Targets and Candidate Drugs in Oral Squamous Cell Carcinoma open Access plus

Volume: 15   Issue: 4
Pp: 328-337
Juan Liu, Xinjie Lian, Feng Liu, Xueling Yan, Chunyan Cheng, Lijia Cheng, Xiaolin Sun* and Zheng Shi*

Protein Secondary Structure Prediction: A Review of Progress and Directions open Access plus

Volume: 15   Issue: 2
Pp: 90-107
Tomasz Smolarczyk, Irena Roterman-Konieczna and Katarzyna Stapor*

Colorectal Cancer Classification and Survival Analysis Based on an Integrated RNA and DNA Molecular Signature open Access plus

Volume: 15  
Pp: 1-18
Mohanad Mohammed*, Henry Mwambi and Bernard Omolo

MGB Block ARMS Real-Time PCR for Diagnosis of CYP2C19 Mutation in a Chinese Population open Access plus

Volume: 14   Issue: 5
Pp: 391-399
Xi-Wen Jiang*, Yue Liu, Tao-Sheng Huang and Xiao-Ya Zhu

Data Integration of Hybrid Microarray and Single Cell Expression Data to Enhance Gene Network Inference open Access plus

Volume: 14   Issue: 3
Pp: 255-268
Wei Zhang, Wenchao Li, Jianming Zhang* and Ning Wang

Improving Self-interacting Proteins Prediction Accuracy Using Protein Evolutionary Information and Weighed-Extreme Learning Machine open Access plus

Volume: 14   Issue: 2
Pp: 115-122
Ji-Yong An*, Yong Zhou, Lei Zhang, Qiang Niu and Da-Fu Wang

Dysfunctional Mechanism of Liver Cancer Mediated by Transcription Factor and Non-coding RNA open Access plus

Volume: 14   Issue: 2
Pp: 100-107
Wei Zeng, Fang Wang, Yu Ma, Xianchun Liang and Ping Chen*

Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse open Access plus

Volume: 13   Issue: 5
Pp: 450-460
Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen

Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed open Access plus

Volume: 13   Issue: 4
Pp: 396-406
Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi

SARELI: Sequence Alignment by Radial Evaluation of Local Interactions open Access plus

Volume: 13   Issue: 3
Pp: 290-298
Ricardo Ortega, Arturo Chavoya*, Cuauhtemoc Lopez-Martin and Luis Delaye

A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations open Access plus

Volume: 13   Issue: 2
Pp: 141-148
Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei

An Efficient Prediction of HPV Genotypes from Partial Coding Sequences by Chaos Game Representation and Fuzzy k-Nearest Neighbor Technique open Access plus

Volume: 12   Issue: 5
Pp: 431-440
Watcharaporn Tanchotsrinon*, Chidchanok Lursinsap and Yong Poovorawan

A Fast Algorithm for Reconstructing Multiple Sequence Alignment and Phylogeny Simultaneously open Access plus

Volume: 12   Issue: 4
Pp: 329-348
Chi-Tim Ng, Chun Li and Xiaodan Fan*

Novel Elements of Bacterial Genomes – Promoter Islands: Intraspecies Polymorphism and Sequence Stability open Access plus

Volume: 12   Issue: 3
Pp: 194-201
Sergey S. Kiselev, Olga N. Ozoline*, Olga A. Glazunova, Valeriy V. Panyukov and Konstantin S. Shavkunov

Computer Representations of Bioinformatics Models open Access plus

Volume: 11   Issue: 5
Pp: 551-560
Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz

Recent Advances in Mathematical Modeling and Simulation of DNA Replication Process. open Access plus

Volume: 8   Issue: 5
Pp: 591-602
Guoli Ji, Yong Zeng, Jinting Guan, Qingshun Q. Li, Congting Ye and Yunlong Liu

Similarity/Dissimilarity Analysis of Protein Sequences by a New Graphical Representation. open Access plus

Volume: 8   Issue: 5
Pp: 539-544
Guohua Huang and Jerry Hu

S2SNet: A Tool for Transforming Characters and Numeric Sequences into Star Network Topological Indices in Chemoinformatics, Bioinformatics, Biomedical, and Social-Legal Sciences open Access plus

Volume: 8   Issue: 4
Pp: 429-437
Cristian R. Munteanu, Alexandre L. Magalhaes, Aliuska Duardo-Sanchez, Alejandro Pazos and Humberto Gonzalez-Diaz

Review of Stochastic Stability and Analysis Tumor-Immune Systems open Access plus

Volume: 8   Issue: 4
Pp: 390-400
Chis Oana, Opris Dumitru and Concu Riccardo

On the Discovery of Cellular Subsystems in Gene Correlation Networks Using Measures of Centrality open Access plus

Volume: 8   Issue: 3
Pp: 305-314
Kathryn M. Dempsey and Hesham H. Ali

Metabolic Network Analysis: Current Status and Way Forward open Access plus

Volume: 8   Issue: 3
Pp: 285-292
Shweta Kolhi and Ashok S. Kolaskar

Cellular Relationships of Testicular Germ Cell Tumors Determined by Partial Canonical Correlation Analysis of Gene Expression Signatures open Access plus

Volume: 8   Issue: 1
Pp: 72-79
Tingting Yu, Akiko Toshimori, Xia Jinrong, Shigeru Saito, Xingrong Zhou, Katsuhisa Horimoto, Zhining Fan, Kunio Shimizu and Huarong Zhou

Significant Substructure Discovery in Dynamic Networks open Access plus

Volume: 8   Issue: 1
Pp: 46-55
Guimin Qin, Lin Gao and Jianye Yang

Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles open Access plus

Volume: 8   Issue: 1
Pp: 37-45
Naifang Su, Minping Qian and Minghua Deng

Assessing the Statistical Significance of Local Sequence Alignment Based on Transformation Score Matrix open Access plus

Volume: 7   Issue: 4
Pp: 505-511
Juan Li and Huisheng Fang

From Ontology-Based Gene Function to Physiological Model open Access plus

Volume: 7   Issue: 4
Pp: 436-446
Ajay Shiv Sharma, Hari Om Gupta and Petar M. Mitrasinovic

A Novel Method of Sequence Similarity Evaluation in N-dimensional Sequence Space open Access plus

Volume: 7   Issue: 3
Pp: 295-303
Andrzej Kasperski and Renata Kasperska

A Filter Based Feature Selection Algorithm Using Null Space of Covariance Matrix for DNA Microarray Gene Expression Data open Access plus

Volume: 7   Issue: 3
Pp: 289-294
Alok Sharma, Seiya Imoto and Satoru Miyano

Role of Long-Range Contacts and Structural Classification in Understanding the Free Energy of Unfolding of Two-State Proteins open Access plus

Volume: 7   Issue: 2
Pp: 143-151
Balasubramanian Hariha and Samuel Selvaraj

Glocal: Reconstructing Protein 3D Structure from 2D Contact Map by Combining Global and Local Optimization Schemes open Access plus

Volume: 7   Issue: 2
Pp: 116-124
Jun Chen and Hong-Bin Shen

Genome Annotation in Plants and Fungi: EuGene as a Model Platform open Access plus

Volume: 3   Issue: 2
Pp: 87-97
Sylvain Foissac, Jerome Gouzy, Stephane Rombauts, Catherine Mathe, Joelle Amselem, Lieven Sterck, Yves Van de Peer, Pierre Rouze and Thomas Schiex

Phenotype Data: A Neglected Resource in Biomedical Research? open Access plus

Volume: 1   Issue: 3
Pp: 347-358
Philip Groth and Bertram Weiss

The Role of the COG Database in Comparative and Functional Genomics open Access plus

Volume: 1   Issue: 3
Pp: 291-300
Michael Kaufmann