Current Bioinformatics

MDAPlatform: a Component-based Platform for Constructing and Assessing miRNA-disease association Prediction Methods

Volume: 16   Issue:
Pp: 1-12
Yayan Zhang, Guihua Duan, Cheng Yan*, Haolun Yi, Fang-Xiang Wu and Jianxin Wang
DOI: 10.2174/1574893616999210120181506

Chemical Genetic Validation of GWAS-derived Disease Loci

Volume: 16   Issue:
Pp: 1-10
Yuan Quan and Hong-Yu Zhang*
DOI: 10.2174/1574893616999210120182030

Identification of Most Relevant Features for Classification of Francisella tularensis using Machine Learning

Volume: 15   Issue: 10
Pp: 1197-1212
Fareed Ahmad*, Amjad Farooq, Muhammad Usman Ghani Khan, Muhammad Zubair Shabbir, Masood Rabbani and Irshad Hussain
DOI: 10.2174/1574893615666200219113900

Comparisons of microRNA Set Enrichment Analysis Tools on Cancer De-Regulated miRNAs from TCGA Expression Datasets

Volume: 15   Issue: 10
Pp: 1104-1112
Jianwei Li*, Leibo Liu, Qinghua Cui and Yuan Zhou*
DOI: 10.2174/1574893615666200224095041

Classification of Chromosomal DNA Sequences Using Hybrid Deep Learning Architectures

Volume: 15   Issue: 10
Pp: 1130-1136
Zhihua Du*, Xiangdong Xiao and Vladimir N. Uversky*
DOI: 10.2174/1574893615666200224095531

A Simple Protein Evolutionary Classification Method Based on the Mutual Relations Between Protein Sequences

Volume: 15   Issue: 10
Pp: 1113-1129
Xiaogeng Wan* and Xinying Tan
DOI: 10.2174/1574893615666200305090055

IsoDetect: Detection of Splice Isoforms from Third Generation Long Reads Based on Short Feature Sequences

Volume: 15   Issue: 10
Pp: 1168-1177
Hong-Dong Li, Wenjing Zhang , Yuwen Luo and Jianxin Wang *
DOI: 10.2174/1574893615666200316101205

Using Bioinformatics to Quantify the Variability and Diversity of the Microbial Community Structure in Pond Ecosystems of a Subtropical Catchment

Volume: 15   Issue: 10
Pp: 1178-1186
Jiaogen Zhou*, Yang Wang and Qiuliang Lei
DOI: 10.2174/1574893615999200422120819

Robust Transcription Factor Binding Site Prediction Using Deep Neural Networks

Volume: 15   Issue: 10
Pp: 1137-1152
Kanu Geete* and Manish Pandey
DOI: 10.2174/1574893615999200429121156

MRMD2.0: A Python Tool for Machine Learning with Feature Ranking and Reduction

Volume: 15   Issue: 10
Pp: 1213-1221
Shida He, Fei Guo, Quan Zou* and HuiDing
DOI: 10.2174/1574893615999200503030350

Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-Generation Sequencing

Volume: 15   Issue: 10
Pp: 1153-1159
Binsheng He*, Jialiang Yang, Geng Tian, Pingping Bing* and Jidong Lang*
DOI: 10.2174/1574893615999200505074805

Integrative Analysis of miRNA-mediated Competing Endogenous RNA Network Reveals the lncRNAs-mRNAs Interaction in Glioblastoma Stem Cell Differentiation

Volume: 15   Issue: 10
Pp: 1187-1196
Zhenyu Zhao, Cheng Zhang, Mi Li*, Xinguang Yu*, Hailong Liu, Qi Chen, Jian Wang, Shaopin Shen and Jingjing Jiang
DOI: 10.2174/1574893615999200511074226

Salient Features, Data and Algorithms for microRNA Screening from Plants: A Review on the Gains and Pitfalls of Machine Learning Techniques

Volume: 15   Issue: 10
Pp: 1091-1103
Garima Ayachit, Inayatullah Shaikh, Himanshu Pandya* and Jayashankar Das*
DOI: 10.2174/1574893615999200601121756

Whole-Exome Sequencing of Tumor-only Samples Reveals the Association between Somatic Alterations and Clinical Features in Pancreatic Cancer

Volume: 15   Issue: 10
Pp: 1160-1167
Wenwen Ran, Xiangbin Chen , Bo Wang, Ping Yang, Yongxing Li, Yujing Xiao, Xiaonan Wang, Guangqi Li, Lili Wang, Yingmin Han, Yonggang Peng, Jidong Lang, Yuebin Liang, Yupei Xiao, Qingqing Lu, Huixin Lin , Geng Tian, Dawei Yuan, Chaoyang Deng, Jialiang Yang and Xiaoming Xing*
DOI: 10.2174/1574893615999200626190346

Genome-wide Identification of Differently Expressed lncRNAs, mRNAs, and circRNAs in Patients with Osteoarthritis

Volume: 15   Issue: 10
Pp: 1222-1230
Yeqing Sun*, Lei Chen, Yingqi Zhang, Jincheng Zhang and Shashi Ranjan Tiwari
DOI: 10.2174/1574893615999200706002907

Acknowledgements to Reviewers promotion: free to download

Volume: 15   Issue: 10
Pp: 1231-1232

DOI: 10.2174/157489361510201224092240

Model with the GBDT for Colorectal Adenoma Risk Diagnosis

Volume: 15   Issue: 9
Pp: 971-979
Junbo Gao*, Lifeng Zhang, Gaiqing Yu, Guoqiang Qu, Yanfeng Li and Xuebing Yang
DOI: 10.2174/1574893614666191120142005

An Analysis Model of Protein Mass Spectrometry Data and Its Application

Volume: 15   Issue: 9
Pp: 1010-1016
Pingan He*, Longao Hou, Hong Tao, Qi Dai and Yuhua Yao
DOI: 10.2174/1574893614666191202150844

Co-expression Network Analysis Revealing the Potential Regulatory Roles of lncRNAs in Atrial Fibrillation

Volume: 15   Issue: 9
Pp: 980-987
Lishui Shen, Guilin Shen, Xiaoli Lu, Guomin Ding and Xiaofeng Hu*
DOI: 10.2174/1574893614666191210142141

Aggregation Prone Regions in Antibody Sequences Raised Against Vibrio cholerae: A Bioinformatic Approach

Volume: 15   Issue: 9
Pp: 988-1009
Zakia Akter, Anamul Haque, Md. Sabir Hossain, Firoz Ahmed* and Md Asiful Islam*
DOI: 10.2174/1574893615666200106120504

Exploiting XG Boost For Predicting Enhancer-Promoter Interactions

Volume: 15   Issue: 9
Pp: 1036-1045
Xiaojuan Yu, Jianguo Zhou, Mingming Zhao , Chao Yi, Qing Duan*, Wei Zhou* and Jin Li*
DOI: 10.2174/1574893615666200120103948

Identifying Breast Cancer-induced Gene Perturbations and its Application in Guiding Drug Repurposing

Volume: 15   Issue: 9
Pp: 1075-1089
Jujuan Zhuang, Shuang Dai, Lijun Zhang, Pan Gao, Yingmin Han, Geng Tian, Na Yan, Min Tang* and Ling Kui*
DOI: 10.2174/1574893615666200203104214

Cancer Diagnosis and Disease Gene Identification via Statistical Machine Learning

Volume: 15   Issue: 9
Pp: 956-962
Liuyuan Chen*, Juntao Li* and Mingming Chang
DOI: 10.2174/1574893615666200207094947

Identification of Carcinogenic Chemicals with Network Embedding and Deep Learning Methods

Volume: 15   Issue: 9
Pp: 1017-1026
Xuefei Peng, Lei Chen* and Jian-Peng Zhou
DOI: 10.2174/1574893615999200414084317

Stochastic Neighbor Embedding Algorithm and Its Application in Molecular Biological Data

Volume: 15   Issue: 9
Pp: 963-970
Pan Wang, Guiyang Zhang, You Li, Ammar Oad and Guohua Huang*
DOI: 10.2174/1574893615999200414093636

Sequence-Based Identification of Allergen Proteins Developed by Integration of PseAAC and Statistical Moments via 5-Step Rule

Volume: 15   Issue: 9
Pp: 1046-1055
Yaser Daanial Khan*, Ebraheem Alzahrani, Wajdi Alghamdi and Malik Zaka Ullah
DOI: 10.2174/1574893615999200424085947

GASPIDs Versus Non-GASPIDs - Differentiation Based on Machine Learning Approach

Volume: 15   Issue: 9
Pp: 1056-1064
Fawad Ahmad, Saima Ikram, Jamshaid Ahmad*, Waseem Ullah, Fahad Hassan, Saeed Ullah Khattak and Irshad Ur Rehman
DOI: 10.2174/1574893615999200425225729

An Algorithm to Improve the Speed of Semi and Non-specific Enzyme Searches in Proteomics

Volume: 15   Issue: 9
Pp: 1065-1074
Zach Rolfs, Robert J. Millikin and Lloyd M. Smith*
DOI: 10.2174/1574893615999200429123334

A Mini-Review of Computational Approaches to Predict Functions and Findings of Novel Micro Peptides

Volume: 15   Issue: 9
Pp: 1027-1035
Mohsin Ali Nasir, Samia Nawaz and Jian Huang*
DOI: 10.2174/1574893615999200811130522

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Volume: 15   Issue: 9
Pp: 955-955
Lei Chen
DOI: 10.2174/157489361509201224092120

The Power of Matrix Factorization: Methods for Deconvoluting Genetic Heterogeneous Data at Expression Level

Volume: 15   Issue: 8
Pp: 841-853
Yuan Liu, Zhining Wen* and Menglong Li*
DOI: 10.2174/1574893615666200120110205

Sequence-based Identification of Arginine Amidation Sites in Proteins Using Deep Representations of Proteins and PseAAC

Volume: 15   Issue: 8
Pp: 937-948
Sheraz Naseer*, Waqar Hussain, Yaser Daanial Khan and Nouman Rasool
DOI: 10.2174/1574893615666200129110450

Deep Novo A+: Improving the Deep Learning Model for De Novo Peptide Sequencing with Additional Ion Types and Validation Set

Volume: 15   Issue: 8
Pp: 949-954
Lei Di, Yongxing He and Yonggang Lu*
DOI: 10.2174/1574893615666200204112347

Feature Selection Algorithm for High-dimensional Biomedical Data Using Information Gain and Improved Chemical Reaction Optimization

Volume: 15   Issue: 8
Pp: 912-926
Ge Zhang, Pan Yu , Jianlin Wang* and Chaokun Yan*
DOI: 10.2174/1574893615666200204154358

Bioinformatics Analysis Reveals Functions of MicroRNAs in Rice Under the Drought Stress

Volume: 15   Issue: 8
Pp: 927-936
Yan Peng, Yuewu Liu* and Xinbo Chen*
DOI: 10.2174/1574893615666200207092410

Predicting lncRNA-protein Interactions by Machine Learning Methods: A Review

Volume: 15   Issue: 8
Pp: 831-840
Zhi-Ping Liu*
DOI: 10.2174/1574893615666200224095925

High-density Genetic Linkage Map Construction in Sunflower (Helianthus annuus L.) Using SNP and SSR Markers

Volume: 15   Issue: 8
Pp: 889-897
Pin Lyu, Jianhua Hou*, Haifeng Yu and Huimin Shi
DOI: 10.2174/1574893615666200324134725

Comprehensive Analysis of Features and Annotations of Pathway Databases

Volume: 15   Issue: 8
Pp: 803-820
Ali Ghulam, Xiujuan Lei*, Min Guo and Chen Bian
DOI: 10.2174/1574893615999200413123352

A Review of Protein Inter-residue Distance Prediction

Volume: 15   Issue: 8
Pp: 821-830
He Huang and Xinqi Gong*
DOI: 10.2174/1574893615999200425230056

Supervised Learning in Spiking Neural Networks with Synaptic Delay Plasticity: An Overview

Volume: 15   Issue: 8
Pp: 854-865
Yawen Lan and Qiang Li*
DOI: 10.2174/1574893615999200425230713

An Overview of Abdominal Multi-organ Segmentation

Volume: 15   Issue: 8
Pp: 866-877
Qiang Li, Hong Song*, Lei Chen, Xianqi Meng, Jian Yang and Le Zhang
DOI: 10.2174/1574893615999200425232601

A Review on the Methods of Peptide-MHC Binding Prediction

Volume: 15   Issue: 8
Pp: 878-888
Yang Liu, Xia-hui Ouyang, Zhi-Xiong Xiao, Le Zhang* and Yang Cao*
DOI: 10.2174/1574893615999200429122801

Review of the Applications of Deep Learning in Bioinformatics

Volume: 15   Issue: 8
Pp: 898-911
Yongqing Zhang, Jianrong Yan, Siyu Chen, Meiqin Gong, Dongrui Gao, Min Zhu* and Wei Gan
DOI: 10.2174/1574893615999200711165743

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Volume: 15   Issue: 8
Pp: 801-802
Yongqing Zhang
DOI: 10.2174/157489361508201221092330

Natural Scene Nutrition Information Acquisition and Analysis Based on Deep Learning

Volume: 15   Issue: 7
Pp: 662-670
Tianyue Zhang, Xu Wei, Zhi Li, Fangzhe Shi, Zhiqiang Xia, Mengru Lian, Ling Chen and Hao Zhang*
DOI: 10.2174/1574893614666190723121610

Lung Cancer Classification and Gene Selection by Combining Affinity Propagation Clustering and Sparse Group Lasso

Volume: 15   Issue: 7
Pp: 703-712
Juntao Li*, Mingming Chang, Qinghui Gao, Xuekun Song and Zhiyu Gao
DOI: 10.2174/1574893614666191017103557

A Survey of Metrics Measuring Difference for Rooted Phylogenetic Trees

Volume: 15   Issue: 7
Pp: 697-702
Juan Wang, Xinyue Qi, Bo Cui and Maozu Guo*
DOI: 10.2174/1574893614666191017130217

Gene Regulatory Network Construction Based on a Particle Swarm Optimization of a Long Short-term Memory Network

Volume: 15   Issue: 7
Pp: 713-724
Zhenhao Tang*, Xiangying Chai, Yu Wang and Shengxian Cao
DOI: 10.2174/1574893614666191023115224

Analysis of Oncogene Protein Structure Using Small World Network Concept

Volume: 15   Issue: 7
Pp: 732-740
Neetu Kumari and Anshul Verma*
DOI: 10.2174/1574893614666191113143840

Prediction of Neddylation Sites Using the Composition of k-spaced Amino Acid Pairs and Fuzzy SVM

Volume: 15   Issue: 7
Pp: 725-731
Zhe Ju* and Shi-Yun Wang
DOI: 10.2174/1574893614666191114123453

High-dimensional Causal Mediation Analysis with a Large Number of Mediators Clumping at Zero to Assess the Contribution of the Microbiome to the Risk of Bacterial Pathogen Colonization in Older Adults

Volume: 15   Issue: 7
Pp: 671-696
Wei Liu, John P. Haran, Arlene S. Ash, Jeroan J. Allison, Shangyuan Ye, Jenifer Tjia, Vanni Bucci and Bo Zhang*
DOI: 10.2174/1574893614666191115123219

Recent Advances on the Machine Learning Methods in Identifying Phage Virion Proteins

Volume: 15   Issue: 7
Pp: 657-661
Yingjuan Yang, Chunlong Fan and Qi Zhao*
DOI: 10.2174/1574893614666191203155511

Research on Psychological Scales Based on the Multitheory Fusion

Volume: 15   Issue: 7
Pp: 741-749
Guangdi Liu, Yu Chen Li, Yue Wang, Jing Xiang Liu, Yong Sheng Sang, Wei Zhang* and Le Zhang *
DOI: 10.2174/1574893615666191227091641

A Drug Target Interaction Prediction Based on LINE-RF Learning

Volume: 15   Issue: 7
Pp: 750-757
Jihong Wang, Yue Shi, Xiaodan Wang and Huiyou Chang*
DOI: 10.2174/1574893615666191227092453

A 2D Non-degeneracy Graphical Representation of Protein Sequence and Its Applications

Volume: 15   Issue: 7
Pp: 758-766
Xiaoli Xie* and Yunxiu Zhao
DOI: 10.2174/1574893615666200106114337

A Deep Convolutional Neural Network to Improve the Prediction of Protein Secondary Structure

Volume: 15   Issue: 7
Pp: 767-777
Lin Guo, Qian Jiang, Xin Jin*, Lin Liu, Wei Zhou, Shaowen Yao, Min Wu and Yun Wang
DOI: 10.2174/1574893615666200120103050

Screening of SLE-susceptible SNPs in One Chinese Family with Systemic Lupus Erythematosus

Volume: 15   Issue: 7
Pp: 778-787
Juan Luo, Yanming Meng, Jianzhao Zhai, Ying Zhu, Yizhou Li* and Yongkang Wu*
DOI: 10.2174/1574893615666200120105153

Densely Dilated Spatial Pooling Convolutional Network Using Benign Loss Functions for Imbalanced Volumetric Prostate Segmentation

Volume: 15   Issue: 7
Pp: 788-799
Qiuhua Liu, Min Fu, Hao Jiang and Xinqi Gong*
DOI: 10.2174/1574893615666200127124145

Identification of Cancerlectins By Using Cascade Linear Discriminant Analysis and Optimal g-gap Tripeptide Composition

Volume: 15   Issue: 6
Pp: 528-537
Liangwei Yang , Hui Gao *, Keyu Wu, Haotian Zhang , Changyu Li and Lixia Tang
DOI: 10.2174/1574893614666190730103156

An In Silico Immunogenicity Analysis for PbHRH: An Antiangiogenic Peptibody by Fusing HRH Peptide and Human IgG1 Fc Fragment

Volume: 15   Issue: 6
Pp: 547-553
Lin Ning, Jiang Huang *, Bifang He and Juanjuan Kang
DOI: 10.2174/1574893614666190730104348

Improving Multi-type Gram-negative Bacterial Secreted Protein Prediction via Protein Evolutionary Information and Feature Ranking

Volume: 15   Issue: 6
Pp: 538-546
Liang Kong*, Lichao Zhang and Shiqian He
DOI: 10.2174/1574893614666190730105629

Predicting LncRNA Subcellular Localization Using Unbalanced Pseudo-k Nucleotide Compositions

Volume: 15   Issue: 6
Pp: 554-562
Xiao-Fei Yang, Yuan-Ke Zhou, Lin Zhang, Yang Gao* and Pu-Feng Du*
DOI: 10.2174/1574893614666190902151038

Integrating Second-order Moving Average and Over-sampling Algorithm to Predict Apoptosis Protein Subcellular Localization

Volume: 15   Issue: 6
Pp: 517-527
Yunyun Liang* and Shengli Zhang*
DOI: 10.2174/1574893614666190902155811

Analysis of the Epigenetic Signature of Cell Reprogramming by Computational DNA Methylation Profiles

Volume: 15   Issue: 6
Pp: 589-599
Yongchun Zuo*, Mingmin Song, Hanshuang Li, Xing Chen, Pengbo Cao, Lei Zheng and Guifang Cao*
DOI: 10.2174/1574893614666190919103752

Docking Techniques in Toxicology: An Overview

Volume: 15   Issue: 6
Pp: 600-610
Meenakshi Gupta, Ruchika Sharma and Anoop Kumar*
DOI: 10.2174/1574893614666191003125540

Using the Chou’s Pseudo Component to Predict the ncRNA Locations Based on the Improved K-Nearest Neighbor (iKNN) Classifier

Volume: 15   Issue: 6
Pp: 563-573
Chengyan Wu*, Qianzhong Li, Ru Xing and Guo-Liang Fan
DOI: 10.2174/1574893614666191003142406

Complex Networks, Gene Expression and Cancer Complexity: A Brief Review of Methodology and Applications

Volume: 15   Issue: 6
Pp: 629-655
A.C. Iliopoulos, G. Beis, P. Apostolou and I. Papasotiriou*
DOI: 10.2174/1574893614666191017093504

The Regulation of Target Genes by Co-occupancy of Transcription Factors, c-Myc and Mxi1 with Max in the Mouse Cell Line

Volume: 15   Issue: 6
Pp: 581-588
Hui Wang, Yuan Liu, Hua Guan* and Guo-Liang Fan*
DOI: 10.2174/1574893614666191106103633

An Information Gain-based Method for Evaluating the Classification Power of Features Towards Identifying Enhancers

Volume: 15   Issue: 6
Pp: 574-580
Tianjiao Zhang, Rongjie Wang, Qinghua Jiang* and Yadong Wang*
DOI: 10.2174/1574893614666191120141032

Rosetta and the Journey to Predict Proteins’ Structures, 20 Years on

Volume: 15   Issue: 6
Pp: 611-628
Jad Abbass* and Jean-Christophe Nebel
DOI: 10.2174/1574893615999200504103643

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Volume: 15   Issue: 6
Pp: 515-516
Hao Lin
DOI: 10.2174/157489361506200610112345

Identification of Lysine Carboxylation Sites in Proteins by Integrating Statistical Moments and Position Relative Features via General PseAAC

Volume: 15   Issue: 5
Pp: 396-407
Saba Amanat, Adeel Ashraf, Waqar Hussain, Nouman Rasool and Yaser D. Khan*
DOI: 10.2174/1574893614666190723114923

The Human OncoBiome Database: A Database of Cancer Microbiome Datasets

Volume: 15   Issue: 5
Pp: 472-477
Nadia and Jayashree Ramana*
DOI: 10.2174/1574893614666190902152727

White Blood Cell Image Segmentation Based on Color Component Combination and Contour Fitting

Volume: 15   Issue: 5
Pp: 463-471
Chuansheng Wang, Hong Zhang*, Zuoyong Li*, Xiaogen Zhou, Yong Cheng* and Rongyan Chen
DOI: 10.2174/1574893614666191017102310

Whole Aegilops tauschii Transcriptome Investigation Revealed Nine Novel miRNAs Involved in Stress Response

Volume: 15   Issue: 5
Pp: 455-462
Behnam Bakhshi* and Ehsan Mohseni Fard
DOI: 10.2174/1574893614666191017151708

A Review of Pathway Databases and Related Methods Analysis

Volume: 15   Issue: 5
Pp: 379-395
Ali Ghulam, Xiujuan Lei*, Min Guo and Chen Bian
DOI: 10.2174/1574893614666191018162505

ZFARED: A Database of the Antioxidant Response Elements in Zebrafish

Volume: 15   Issue: 5
Pp: 415-419
Azhwar Raghunath, Raju Nagarajan and Ekambaram Perumal*
DOI: 10.2174/1574893614666191018172213

APP Medical Diagnostic Check-up Consultation System Based on Speech Recognition

Volume: 15   Issue: 5
Pp: 408-414
Zhi Li, Yusen Wang, Shiwen Tai, Jingquan Wang, Yusong Huang, Wu Jiang and Hao Zhang*
DOI: 10.2174/1574893614666191105161335

Genetic Algorithm-based Feature Selection Approach for Enhancing the Effectiveness of Similarity Searching in Ligand-based Virtual Screening

Volume: 15   Issue: 5
Pp: 431-444
Fouaz Berrhail* and Hacene Belhadef
DOI: 10.2174/1574893614666191119123935

Hardware Performance Evaluation of De novo Transcriptome Assembly Software in Amazon Elastic Compute Cloud

Volume: 15   Issue: 5
Pp: 420-430
Fernando Mora-Márquez, José Luis Vázquez-Poletti, Víctor Chano, Carmen Collada, Álvaro Soto and Unai López de Heredia*
DOI: 10.2174/1574893615666191219095817

Screening and Analysis of Hypolipidemic Components from Shuangdan Capsule Based on Pancreatic Lipase

Volume: 15   Issue: 5
Pp: 478-492
Y.J. Qi*, H.N. Lu, Y.M. Zhao, Z. Wang, Y.J. Ji, N.Z. Jin and Z.R. Ma
DOI: 10.2174/1574893615666200106113910

A Sequence-segment Neighbor Encoding Schema for Protein Hotspot Residue Prediction

Volume: 15   Issue: 5
Pp: 445-454
Peng Chen, Tong Shen, Youzhi Zhang* and Bing Wang*
DOI: 10.2174/1574893615666200106115421

Bioinformatics Analysis of The Rhizosphere Microbiota of Dangshan Su Pear in Different Soil Types

Volume: 15   Issue: 5
Pp: 503-514
Xiaojing Ma, Sambhaji Balaso Thakar, Huimin Zhang, Zequan Yu, Li Meng and Junyang Yue*
DOI: 10.2174/1574893615666200129104523

Predicting Thermophilic Proteins by Machine Learning

Volume: 15   Issue: 5
Pp: 493-502
Xian-Fang Wang*, Peng Gao, Yi-Feng Liu, Hong-Fei Li and Fan Lu
DOI: 10.2174/1574893615666200207094357

Predicting Protein Phosphorylation Sites Based on Deep Learning

Volume: 15   Issue: 4
Pp: 300-308
Haixia Long*, Zhao Sun, Manzhi Li, Hai Yan Fu and Ming Cai Lin*
DOI: 10.2174/1574893614666190902154332

A Machine Learning-based Diagnosis of Thyroid Cancer Using Thyroid Nodules Ultrasound Images

Volume: 15   Issue: 4
Pp: 349-358
Xuesi Ma, Baohang Xi, Yi Zhang, Lijuan Zhu, Xin Sui*, Geng Tian and Jialiang Yang*
DOI: 10.2174/1574893614666191017091959

SimExact – An Efficient Method to Compute Function Similarity Between Proteins Using Gene Ontology

Volume: 15   Issue: 4
Pp: 318-327
Najmul Ikram*, Muhammad Abdul Qadir and Muhammad Tanvir Afzal
DOI: 10.2174/1574893614666191017092842

Application of a Deep Matrix Factorization Model on Integrated Gene Expression Data

Volume: 15   Issue: 4
Pp: 359-367
Yong-Jing Hao, Mi-Xiao Hou, Ying-Lian Gao, Jin-Xing Liu* and Xiang-Zhen Kong
DOI: 10.2174/1574893614666191017094331

Finding Community of Brain Networks Based on Neighbor Index and DPSO with Dynamic Crossover

Volume: 15   Issue: 4
Pp: 287-299
Jie Zhang, Junhong Feng* and Fang-Xiang Wu*
DOI: 10.2174/1574893614666191017100657

Analysis and Comparison of RNA Pseudouridine Site Prediction Tools

Volume: 15   Issue: 4
Pp: 279-286
Wei Chen* and Kewei Liu
DOI: 10.2174/1574893614666191018171521

ConvsPPIS: Identifying Protein-protein Interaction Sites by an Ensemble Convolutional Neural Network with Feature Graph

Volume: 15   Issue: 4
Pp: 368-378
Huaixu Zhu, Xiuquan Du* and Yu Yao
DOI: 10.2174/1574893614666191105155713

A Novel Integrative Approach for Non-coding RNA Classification Based on Deep Learning

Volume: 15   Issue: 4
Pp: 338-348
Abdelbasset Boukelia*, Anouar Boucheham, Meriem Belguidoum, Mohamed Batouche, Farida Zehraoui and Fariza Tahi
DOI: 10.2174/1574893614666191105160633

Identification of Novel Key Targets and Candidate Drugs in Oral Squamous Cell Carcinoma open access plus

Volume: 15   Issue: 4
Pp: 328-337
Juan Liu, Xinjie Lian, Feng Liu, Xueling Yan, Chunyan Cheng, Lijia Cheng, Xiaolin Sun* and Zheng Shi*
DOI: 10.2174/1574893614666191127101836

A Sequential Ensemble Model for Communicable Disease Forecasting

Volume: 15   Issue: 4
Pp: 309-317
Nashreen Sultana*, Nonita Sharma, Krishna Pal Sharma and Shobhit Verma
DOI: 10.2174/1574893614666191202153824

Relevance of Molecular Docking Studies in Drug Designing

Volume: 15   Issue: 4
Pp: 270-278
Ritu Jakhar, Mehak Dangi, Alka Khichi and Anil Kumar Chhillar*
DOI: 10.2174/1574893615666191219094216

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Volume: 15   Issue: 4
Pp: 269-269
Bing Niu
DOI: 10.2174/157489361504200406092656

Elastic Net Regularized Softmax Regression Methods for Multi-subtype Classification in Cancer

Volume: 15   Issue: 3
Pp: 212-224
Lin Zhang*, Yanling He, Haiting Song, Xuesong Wang, Nannan Lu, Lei Sun and Hui Liu*
DOI: 10.2174/1574893613666181112141724

Sequence-based Structural B-cell Epitope Prediction by Using Two Layer SVM Model and Association Rule Features

Volume: 15   Issue: 3
Pp: 246-252
Jehn-Hwa Kuo, Chi-Chang Chang*, Chi-Wei Chen, Heng-Hao Liang, Chih-Yen Chang and Yen-Wei Chu*
DOI: 10.2174/1574893614666181123155831

HSEAT: A Tool for Plant Heat Shock Element Analysis, Motif Identification and Analysis

Volume: 15   Issue: 3
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Sarah Rizwan Qazi, Noor ul Haq, Shakeel Ahmad and Samina N. Shakeel*
DOI: 10.2174/1574893614666190102151956

Research on Gastric Cancer’s Drug-resistant Gene Regulatory Network Model

Volume: 15   Issue: 3
Pp: 225-234
Zhi Li, Tianyue Zhang, Haojie Lei, Liyan Wei, Yuanning Liu, Yadi Shi, Shuyi Li, Bowen Shen, Hao Guo, Zhangqian Chen, Xiaorong Yi and Hao Zhang*
DOI: 10.2174/1574893614666190722102557

Leukocyte Image Segmentation Based on Adaptive Histogram Thresholding and Contour Detection

Volume: 15   Issue: 3
Pp: 187-195
Xiaogen Zhou, Zuoyong Li, Huosheng Xie*, Ting Feng, Yan Lu, Chuansheng Wang and Rongyan Chen
DOI: 10.2174/1574893614666190723115832