Current Bioinformatics

Salient Features, Data and Algorithms for MicroRNA Screening from Plants: A Review on the Gains and Pitfalls of Machine Learning Techniques

Volume: 15   Issue: 10
Pp: 1091-1103
Garima Ayachit, Inayatullah Shaikh, Himanshu Pandya* and Jayashankar Das*
DOI: 10.2174/1574893615999200601121756

Identification of Novel Key Targets and Candidate Drugs in Oral Squamous Cell Carcinoma open access plus

Volume: 15   Issue: 4
Pp: 328-337
Juan Liu, Xinjie Lian, Feng Liu, Xueling Yan, Chunyan Cheng, Lijia Cheng, Xiaolin Sun* and Zheng Shi*
DOI: 10.2174/1574893614666191127101836

Introduction of Advanced Methods for Structure-based Drug Discovery

Volume: 16   Issue: 3
Pp: 351-363
Bilal Shaker, Kha Mong Tran, Chanjin Jung and Dokyun Na*
DOI: 10.2174/1574893615999200703113200

Protein Secondary Structure Prediction: A Review of Progress and Directions open access plus

Volume: 15   Issue: 2
Pp: 90-107
Tomasz Smolarczyk, Irena Roterman-Konieczna and Katarzyna Stapor*
DOI: 10.2174/1574893614666191017104639

A Simple Protein Evolutionary Classification Method Based on the Mutual Relations Between Protein Sequences

Volume: 15   Issue: 10
Pp: 1113-1129
Xiaogeng Wan* and Xinying Tan
DOI: 10.2174/1574893615666200305090055

Detecting TYMS Tandem Repeat Polymorphism by the PSSD Method Based on Next-generation Sequencing

Volume: 15   Issue: 10
Pp: 1153-1159
Binsheng He*, Jialiang Yang, Geng Tian, Pingping Bing* and Jidong Lang*
DOI: 10.2174/1574893615999200505074805

Whole-exome Sequencing of Tumor-only Samples Reveals the Association between Somatic Alterations and Clinical Features in Pancreatic Cancer

Volume: 15   Issue: 10
Pp: 1160-1167
Wenwen Ran, Xiangbin Chen , Bo Wang, Ping Yang, Yongxing Li, Yujing Xiao, Xiaonan Wang, Guangqi Li, Lili Wang, Yingmin Han, Yonggang Peng, Jidong Lang, Yuebin Liang, Yupei Xiao, Qingqing Lu, Huixin Lin , Geng Tian, Dawei Yuan, Chaoyang Deng, Jialiang Yang and Xiaoming Xing*
DOI: 10.2174/1574893615999200626190346

Fusing Multiple Biological Networks to Effectively Predict miRNA-disease Associations

Volume: 16   Issue: 3
Pp: 371-384
Qingqi Zhu, Yongxian Fan* and Xiaoyong Pan
DOI: 10.2174/1574893615999200715165335

Classification of Chromosomal DNA Sequences Using Hybrid Deep Learning Architectures

Volume: 15   Issue: 10
Pp: 1130-1136
Zhihua Du*, Xiangdong Xiao and Vladimir N. Uversky*
DOI: 10.2174/1574893615666200224095531

Genome-wide Identification of Differently Expressed lncRNAs, mRNAs, and circRNAs in Patients with Osteoarthritis

Volume: 15   Issue: 10
Pp: 1222-1230
Yeqing Sun*, Lei Chen, Yingqi Zhang, Jincheng Zhang and Shashi Ranjan Tiwari
DOI: 10.2174/1574893615999200706002907

MRMD2.0: A Python Tool for Machine Learning with Feature Ranking and Reduction promotion: free to download

Volume: 15   Issue: 10
Pp: 1213-1221
Shida He, Fei Guo, Quan Zou* and HuiDing
DOI: 10.2174/1574893615999200503030350

Robust Transcription Factor Binding Site Prediction Using Deep Neural Networks

Volume: 15   Issue: 10
Pp: 1137-1152
Kanu Geete* and Manish Pandey
DOI: 10.2174/1574893615999200429121156

A Review of Protein Inter-residue Distance Prediction

Volume: 15   Issue: 8
Pp: 821-830
He Huang and Xinqi Gong*
DOI: 10.2174/1574893615999200425230056

High-density Genetic Linkage Map Construction in Sunflower (Helianthus annuus L.) Using SNP and SSR Markers

Volume: 15   Issue: 8
Pp: 889-897
Pin Lyu, Jianhua Hou*, Haifeng Yu and Huimin Shi
DOI: 10.2174/1574893615666200324134725

Gene Set Correlation Analysis and Visualization Using Gene Expression Data

Volume: 16   Issue: 3
Pp: 406-421
Chen-An Tsai* and James J. Chen
DOI: 10.2174/1574893615999200629124444

Comparisons of MicroRNA Set Enrichment Analysis Tools on Cancer De-regulated miRNAs from TCGA Expression Datasets

Volume: 15   Issue: 10
Pp: 1104-1112
Jianwei Li*, Leibo Liu, Qinghua Cui and Yuan Zhou*
DOI: 10.2174/1574893615666200224095041

Characterization and Prediction of Presynaptic and Postsynaptic Neurotoxins Based on Reduced Amino Acids and Biological Properties

Volume: 16   Issue: 3
Pp: 364-370
Yiyin Cao, Chunlu Yu, Shenghui Huang, Shiyuan Wang, Yongchun Zuo* and Lei Yang*
DOI: 10.2174/1574893615999200707150512

Using Bioinformatics to Quantify the Variability and Diversity of the Microbial Community Structure in Pond Ecosystems of a Subtropical Catchment

Volume: 15   Issue: 10
Pp: 1178-1186
Jiaogen Zhou*, Yang Wang and Qiuliang Lei
DOI: 10.2174/1574893615999200422120819

Transcriptome Analysis Reveals Possible Virulence Factors of Paragonimus proliferus

Volume: 16   Issue: 2
Pp: 197-206
Sheng-Hao Li, Shu-De Li, Kun-Li Wu, Jun-Yi Li, Hong-Juan Li, Wei-Qun Wang, Li-Jun Yang, Jing-Jing Xu, Guo-Ji Chang, Yan-Ling Zhang, Qiu-Hong Shu, Shan-Shan Zhuang, Zhi-Qiang Ma, Shu-Meiqi He, Min Zhu, Wen-Lin Wang* and Hong-Li Huang*
DOI: 10.2174/1574893615999200728203648