Current Bioinformatics


Quan Zou
University of Electronic Science and Technology of China

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Comprehensive Analysis of Features and Annotations of Pathway Databases

Volume: 15   Issue: 8
Pp: 803-820
Ali Ghulam, Xiujuan Lei*, Min Guo and Chen Bian
DOI: 10.2174/1574893615999200413123352

A Survey of Metrics Measuring Difference for Rooted Phylogenetic Trees

Volume: 15   Issue: 7
Pp: 697-702
Juan Wang, Xinyue Qi, Bo Cui and Maozu Guo*
DOI: 10.2174/1574893614666191017130217

Recent Advances on the Machine Learning Methods in Identifying Phage Virion Proteins

Volume: 15   Issue: 7
Pp: 657-661
Yingjuan Yang, Chunlong Fan and Qi Zhao*
DOI: 10.2174/1574893614666191203155511

A Review of Pathway Databases and Related Methods Analysis

Volume: 15   Issue: 5
Pp: 379-395
Ali Ghulam, Xiujuan Lei*, Min Guo and Chen Bian
DOI: 10.2174/1574893614666191018162505

Current State of the Art for Survival Prediction in Cancer Using Data Mining Techniques

Volume: 15   Issue: 3
Pp: 174-186
M.N. Doja, Ishleen Kaur* and Tanvir Ahmad
DOI: 10.2174/1574893614666190902152142

Computational Approaches for Transcriptome Assembly Based on Sequencing Technologies

Volume: 15   Issue: 1
Pp: 2-16
Yuwen Luo, Xingyu Liao, Fang-Xiang Wu and Jianxin Wang*
DOI: 10.2174/1574893614666190410155603

Predicting Drug Side Effects with Compact Integration of Heterogeneous Networks

Volume: 14   Issue: 8
Pp: 709-720
Xian Zhao, Lei Chen*, Zi-Han Guo and Tao Liu
DOI: 10.2174/1574893614666190220114644

PlncRNADB: A Repository of Plant lncRNAs and lncRNA-RBP Protein Interactions

Volume: 14   Issue: 7
Pp: 621-627
Youhuang Bai, Xiaozhuan Dai, Tiantian Ye, Peijing Zhang, Xu Yan, Xiaonan Gong, Siliang Liang and Ming Chen*
DOI: 10.2174/1574893614666190131161002

RMDB: An Integrated Database of Single-cytosine-resolution DNA Methylation in Oryza Sativa

Volume: 14   Issue: 6
Pp: 524-531
Tiansheng Zhu, Jihong Guan, Hui Liu and Shuigeng Zhou*
DOI: 10.2174/1574893614666190211161717

Analysis of Single-Cell RNA-seq Data by Clustering Approaches

Volume: 14   Issue: 4
Pp: 314-322
Xiaoshu Zhu, Hong-Dong Li, Lilu Guo, Fang-Xiang Wu and Jianxin Wang*
DOI: 10.2174/1574893614666181120095038

Protein Inter-Residue Contacts Prediction: Methods, Performances and Applications

Volume: 14   Issue: 3
Pp: 178-189
Xiaoyang Jing, Qimin Dong, Ruqian Lu and Qiwen Dong*
DOI: 10.2174/1574893613666181109130430

The Influence of Memory-Aware Computation on Distributed BLAST

Volume: 14   Issue: 2
Pp: 157-163
Majid Hajibaba, Mohsen Sharifi and Saeid Gorgin*
DOI: 10.2174/1574893613666180601080811

Low Rank Representation and Its Application in Bioinformatics

Volume: 13   Issue: 5
Pp: 508-517
Yuan You, Hongmin Cai* and Jiazhou Chen
DOI: 10.2174/1574893612666171121155347

Recent Progress in Long Noncoding RNAs Prediction

Volume: 13   Issue: 4
Pp: 344-351
Yuhua Yao*, Xianhong Li, Lili Geng, Xuying Nan, Zhaohui Qi and Bo Liao*
DOI: 10.2174/1574893612666170905153933

Gene Selection Using High Dimensional Gene Expression Data: An Appraisal

Volume: 13   Issue: 3
Pp: 225-233
Abhishek Bhola* and Shailendra Singh*
DOI: 10.2174/1574893611666160610104946

Hybrid High Exploration Particle Swarm Optimization Algorithm Improves the Prediction of the 2-Dimensional Hydrophobic-Polar Model for Protein Folding

Volume: 13   Issue: 2
Pp: 182-192
Cheng-Hong Yang, Yu-Shiun Lin, Sin-Hua Moi, Kuo-Chuan Wu, Li-Yeh Chuang* and Hsueh-Wei Chang*
DOI: 10.2174/1574893612666171006161527

Prediction of Protein-Peptide Interactions with a Nearest Neighbor Algorithm

Volume: 13   Issue: 1
Pp: 14-24
Bi-Qing Li, Yu-Hang Zhang, Mei-Ling Jin, Tao Huang and Yu-Dong Cai*
DOI: 10.2174/1574893611666160711162006

Identification of Robust Clustering Methods in Gene Expression Data Analysis

Volume: 12   Issue: 6
Pp: 558-562
Md. Bipul Hossen* and Md. Siraj-Ud-Doulah
DOI: 10.2174/1574893611666160610103926

Circadian Clock Gene of Grass Carp (Ctenopharyngodon idellus): Genomic Structure and Tissue Expression Pattern of Period1 Gene

Volume: 12   Issue: 4
Pp: 312-319
Yuhui He, Xu-fang Liang, Shan He*, Xiaochen Yuan, Qingchao Wang, Wenjing Cai and Longfang Sun
DOI: 10.2174/1574893611666160527101628

Deep Convolutional Neural Networks for Predicting Hydroxyproline in Proteins

Volume: 12   Issue: 3
Pp: 233-238
HaiXia Long, Mi Wang* and HaiYan Fu
DOI: 10.2174/1574893612666170221152848

Overcoming the Limitation of GWAS Platforms Using Systems Biology Approach

Volume: 12   Issue: 2
Pp: 156-170
Budheswar Dehury, Santosh K. Behera and Sapna Negi*
DOI: 10.2174/1574893611666160426170806

A Systems Biology Perspective on Molecular Cytogenetics promotion: free to download

Volume: 12   Issue: 1
Pp: 4-10
Henry H.Q. Heng and Sarah Regan
DOI: 10.2174/1574893611666160606163419

An Agent-Based Model to Associate Genomic and Environmental Data for Phenotypic Prediction in Plants

Volume: 11   Issue: 5
Pp: 515-522
Sebastien Alameda, Jean-Pierre Mano, Carole Bernon and Sebastien Mella
DOI: 10.2174/1574893611666160617094329

Network Analysis of Protein Structures: The Comparison of Three Topologies

Volume: 11   Issue: 4
Pp: 480-489
Wenying Yan, Guang Hu and Bairong Shen
DOI: 10.2174/1574893611666160602124707

A Computational Study of Three Frequent Mutations of EGFR and their Effects on Protein Dimer Formation and Non-Small Cell Lung Cancer Drug Resistance

Volume: 11   Issue: 3
Pp: 382-391
Zhiyong Shen, Debby D. Wang, Lichun Ma, Hong Yan, Maria P. Wong and Victor H.F. Lee
DOI: 10.2174/1574893611666160322233746

Network Propagation Reveals Novel Features Predicting Drug Response of Cancer Cell Lines

Volume: 11   Issue: 2
Pp: 203-210
Jiguang Wang, Judith Kribelbauer and Raul Rabadan
DOI: 10.2174/1574893611666160125222144

Iterative Multi Level Calibration of Metabolic Networks promotion: free to download

Volume: 11   Issue: 1
Pp: 93-105
Max Conway, Claudio Angione and Pietro Liò
DOI: 10.2174/1574893611666151203222505

Graph-Based Processing of Macromolecular Information

Volume: 10   Issue: 5
Pp: 606-631
Cristian R. Munteanu, Vanessa Aguiar-Pulido, Ana Freire, Marcos Martínez-Romero, Ana B. Porto-Pazos, Javier Pereira and Julian Dorado
DOI: 10.2174/1574893610666151008012438

Flux Balance Analysis and Thermodynamics: Trends and Strategies in Disease Biology

Volume: 10   Issue: 3
Pp: 268-283
Tarika Vijayaraghavan and Somnath Tagore
DOI: 10.2174/157489361003150723131916

Effect of Hubs in Amino Acid Network on Iron Superoxide Dismutase Stability

Volume: 10   Issue: 2
Pp: 232-239
Yanrui Ding, Xueqin Wang and Zhaolin Mou
DOI: 10.2174/157489361002150518151230

Similarities/Dissimilarities Analysis of Protein Sequences Based on Recurrence Quantification Analysis promotion: free to download

Volume: 10   Issue: 1
Pp: 112-119
Lei Wang, Hui Peng and Jinhua Zheng
DOI: 10.2174/157489361001150309144955

Metabolic Control Analysis and its Applications

Volume: 9   Issue: 5
Pp: 490-498
Ana Meireles and Manuel Simoes
DOI: 10.2174/1574893609666140515230435