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Protein & Peptide Letters


ISSN (Print): 0929-8665
ISSN (Online): 1875-5305

Analysis of Protein Surface Patterns by Pocket Similarity Network

Author(s): Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang and Luonan Chen

Volume 15, Issue 5, 2008

Page: [448 - 455] Pages: 8

DOI: 10.2174/092986608784567474

Price: $65


In this work, in order to reveal protein surface patterns in a systems biology framework, we analyze the similarity among the surface cavities by investigating the features of the pocket similarity network such as the community structure, the small-world property, the scale-free characteristic, and the hubs.

Keywords: Protein surface pattern, pocket similarity, complex network, functional genomics, systems biology

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