Protein Domain Annotation with Predicted Domain-Domain Interaction Networks

Author(s): Xing-Ming Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara

Journal Name: Protein & Peptide Letters

Volume 15 , Issue 5 , 2008

Become EABM
Become Reviewer
Call for Editor


This paper presents a framework for annotating protein domains with predicted domain-domain interaction networks. Specially, domain annotation is formalized as a multi-class classification problem in this work. The numerical experiments on InterPro domains show promising results, which proves the efficiency of our proposed methods.

Keywords: Predicted domain-domain interaction, domain annotation, majority rule, diffusion kernel, shortest path

Rights & PermissionsPrintExport Cite as

Article Details

Year: 2008
Page: [456 - 462]
Pages: 7
DOI: 10.2174/092986608784567609
Price: $65

Article Metrics

PDF: 2