A Fusion Method Based on Alignment Software with SNP and Indel Detection Methods

(E-pub Ahead of Print)

Author(s): Guobing Chen, Chao Tang, Jun Qi, Ying Wang*, Xiaolong Shi*

Journal Name: Combinatorial Chemistry & High Throughput Screening
Accelerated Technologies for Biotechnology, Bioassays, Medicinal Chemistry and Natural Products Research


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Abstract:

Background: With the advent of the second generation sequencing technology, the discovery of sequence alignment and sequence variation is a long-standing challenge.

Results: A method based on general alignment software, SNP and Indel software tools was proposed in this paper. By comparing the advantages of traditional alignment software, we can produce the best alignment. SNP and Indel detection tools fusion research found that different depth of sequencing effect is different. When the sequence depth reaches a certain value, select one of the software for testing.

Conclusions: Finally, the experimental verification shows that SNP and Indel have certain advantages in the comparison of the effects of the fusion method.

Keywords: second-generation sequencing, SNP, Indel, fusion research, software tools, sequence alignment

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Article Details

Published on: 10 December, 2020
(E-pub Ahead of Print)
DOI: 10.2174/1386207323666201211095018
Price: $95

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