Current Bioinformatics

Editor-in-Chief:

Quan Zou
School of Computer Science and Technology
Tianjin University
Tianjin
China

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Open Access Articles

Data Integration of Hybrid Microarray and Single Cell Expression Data to Enhance Gene Network Inference open Access plus

Volume: 14   Issue: 3
Pp: 255-268
Wei Zhang, Wenchao Li, Jianming Zhang* and Ning Wang
DOI:10.2174/1574893614666190104142228

Improving Self-interacting Proteins Prediction Accuracy Using Protein Evolutionary Information and Weighed-Extreme Learning Machine open Access plus

Volume: 14   Issue: 2
Pp: 115-122
Ji-Yong An*, Yong Zhou, Lei Zhang, Qiang Niu and Da-Fu Wang
DOI:10.2174/1574893613666180209161152

Dysfunctional Mechanism of Liver Cancer Mediated by Transcription Factor and Non-coding RNA open Access plus

Volume: 14   Issue: 2
Pp: 100-107
Wei Zeng, Fang Wang, Yu Ma, Xianchun Liang and Ping Chen*
DOI:10.2174/1574893614666181119121916

Large-scale Investigation of Long Noncoding RNA Secondary Structures in Human and Mouse open Access plus

Volume: 13   Issue: 5
Pp: 450-460
Xingli Guo, Lin Gao*, Yu Wang, David K.Y. Chiu, Bingbo Wang, Yue Deng and Xiao Wen
DOI:10.2174/1574893613666180118111019

Inter-Species/Host-Parasite Protein Interaction Predictions Reviewed open Access plus

Volume: 13   Issue: 4
Pp: 396-406
Jumoke Soyemi, Itunnuoluwa Isewon, Jelili Oyelade* and Ezekiel Adebiyi
DOI:10.2174/1574893613666180108155851

SARELI: Sequence Alignment by Radial Evaluation of Local Interactions open Access plus

Volume: 13   Issue: 3
Pp: 290-298
Ricardo Ortega, Arturo Chavoya*, Cuauhtemoc Lopez-Martin and Luis Delaye
DOI:10.2174/1574893613666180130143055

A Novel Approach based on Bipartite Network to Predict Human Microbe-Disease Associations open Access plus

Volume: 13   Issue: 2
Pp: 141-148
Lei Wang*, Pengyao Ping, Linai Kuang, Songtao Ye, Faisal Muhammad Buland lqbal and Tingrui Pei
DOI:10.2174/1574893612666170911143601

An Efficient Prediction of HPV Genotypes from Partial Coding Sequences by Chaos Game Representation and Fuzzy k-Nearest Neighbor Technique open Access plus

Volume: 12   Issue: 5
Pp: 431-440
Watcharaporn Tanchotsrinon*, Chidchanok Lursinsap and Yong Poovorawan
DOI:10.2174/1574893611666161110112006

A Fast Algorithm for Reconstructing Multiple Sequence Alignment and Phylogeny Simultaneously open Access plus

Volume: 12   Issue: 4
Pp: 329-348
Chi-Tim Ng, Chun Li and Xiaodan Fan*
DOI:10.2174/1574893611666161008194345

Novel Elements of Bacterial Genomes – Promoter Islands: Intraspecies Polymorphism and Sequence Stability open Access plus

Volume: 12   Issue: 3
Pp: 194-201
Sergey S. Kiselev, Olga N. Ozoline*, Olga A. Glazunova, Valeriy V. Panyukov and Konstantin S. Shavkunov
DOI:10.2174/1574893612666170321144558

Computer Representations of Bioinformatics Models open Access plus

Volume: 11   Issue: 5
Pp: 551-560
Tomasz Prejzendanc, Szymon Wasik* and Jacek Blazewicz
DOI:10.2174/1574893610666150928193510

Recent Advances in Mathematical Modeling and Simulation of DNA Replication Process. open Access plus

Volume: 8   Issue: 5
Pp: 591-602
Guoli Ji, Yong Zeng, Jinting Guan, Qingshun Q. Li, Congting Ye and Yunlong Liu
DOI:10.2174/15748936113088880005

Similarity/Dissimilarity Analysis of Protein Sequences by a New Graphical Representation. open Access plus

Volume: 8   Issue: 5
Pp: 539-544
Guohua Huang and Jerry Hu
DOI:10.2174/1574893611308050003

S2SNet: A Tool for Transforming Characters and Numeric Sequences into Star Network Topological Indices in Chemoinformatics, Bioinformatics, Biomedical, and Social-Legal Sciences open Access plus

Volume: 8   Issue: 4
Pp: 429-437
Cristian R. Munteanu, Alexandre L. Magalhaes, Aliuska Duardo-Sanchez, Alejandro Pazos and Humberto Gonzalez-Diaz
DOI:10.2174/1574893611308040005

Review of Stochastic Stability and Analysis Tumor-Immune Systems open Access plus

Volume: 8   Issue: 4
Pp: 390-400
Chis Oana, Opris Dumitru and Concu Riccardo
DOI:10.2174/1574893611308040002

On the Discovery of Cellular Subsystems in Gene Correlation Networks Using Measures of Centrality open Access plus

Volume: 8   Issue: 3
Pp: 305-314
Kathryn M. Dempsey and Hesham H. Ali
DOI:10.2174/1574893611308030006

Metabolic Network Analysis: Current Status and Way Forward open Access plus

Volume: 8   Issue: 3
Pp: 285-292
Shweta Kolhi and Ashok S. Kolaskar
DOI:10.2174/1574893611308030003

Cellular Relationships of Testicular Germ Cell Tumors Determined by Partial Canonical Correlation Analysis of Gene Expression Signatures open Access plus

Volume: 8   Issue: 1
Pp: 72-79
Tingting Yu, Akiko Toshimori, Xia Jinrong, Shigeru Saito, Xingrong Zhou, Katsuhisa Horimoto, Zhining Fan, Kunio Shimizu and Huarong Zhou
DOI:10.2174/1574893611308010012

Significant Substructure Discovery in Dynamic Networks open Access plus

Volume: 8   Issue: 1
Pp: 46-55
Guimin Qin, Lin Gao and Jianye Yang
DOI:10.2174/1574893611308010009

Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles open Access plus

Volume: 8   Issue: 1
Pp: 37-45
Naifang Su, Minping Qian and Minghua Deng
DOI:10.2174/1574893611308010008

Assessing the Statistical Significance of Local Sequence Alignment Based on Transformation Score Matrix open Access plus

Volume: 7   Issue: 4
Pp: 505-511
Juan Li and Huisheng Fang
DOI:10.2174/157489312803901036

From Ontology-Based Gene Function to Physiological Model open Access plus

Volume: 7   Issue: 4
Pp: 436-446
Ajay Shiv Sharma, Hari Om Gupta and Petar M. Mitrasinovic
DOI:10.2174/157489312803901054

A Novel Method of Sequence Similarity Evaluation in N-dimensional Sequence Space open Access plus

Volume: 7   Issue: 3
Pp: 295-303
Andrzej Kasperski and Renata Kasperska
DOI:10.2174/157489312802460749

A Filter Based Feature Selection Algorithm Using Null Space of Covariance Matrix for DNA Microarray Gene Expression Data open Access plus

Volume: 7   Issue: 3
Pp: 289-294
Alok Sharma, Seiya Imoto and Satoru Miyano
DOI:10.2174/157489312802460802

Role of Long-Range Contacts and Structural Classification in Understanding the Free Energy of Unfolding of Two-State Proteins open Access plus

Volume: 7   Issue: 2
Pp: 143-151
Balasubramanian Hariha and Samuel Selvaraj
DOI:10.2174/157489312800604372

Glocal: Reconstructing Protein 3D Structure from 2D Contact Map by Combining Global and Local Optimization Schemes open Access plus

Volume: 7   Issue: 2
Pp: 116-124
Jun Chen and Hong-Bin Shen
DOI:10.2174/157489312800604381

Genome Annotation in Plants and Fungi: EuGene as a Model Platform open Access plus

Volume: 3   Issue: 2
Pp: 87-97
Sylvain Foissac, Jerome Gouzy, Stephane Rombauts, Catherine Mathe, Joelle Amselem, Lieven Sterck, Yves Van de Peer, Pierre Rouze and Thomas Schiex
DOI:10.2174/157489308784340702

Phenotype Data: A Neglected Resource in Biomedical Research? open Access plus

Volume: 1   Issue: 3
Pp: 347-358
Philip Groth and Bertram Weiss
DOI:10.2174/157489306777828008

The Role of the COG Database in Comparative and Functional Genomics open Access plus

Volume: 1   Issue: 3
Pp: 291-300
Michael Kaufmann
DOI:10.2174/157489306777828017