Protein & Peptide Letters

Prof. Ben M. Dunn  
Department of Biochemistry and Molecular Biology
University of Florida
College of Medicine
P.O. Box 100245
Gainesville, FL
USA
Email: bdunn@ufl.edu

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Open Access Articles

Therapy-Related Changes in the Serum Proteome Patterns of Early Stage Breast Cancer Patients with Different Outcomes open Access plus

Volume: 24   Issue: 1
Pp: 37-45
Anna Walaszczyk, Monika Pietrowska, Anna Wojakowska, Agata Abramowicz, Aleksandra Chmura, Barbara Maslyk, Pawel Rodziewicz, Joanna Polanska, Katarzyna Behrendt, Elzbieta Nowicka, Rafal Tarnawski and Piotr Widlak
DOI:10.2174/0929866523666161128154412

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Glycan Phosphorylases in Multi-Enzyme Synthetic Processes open Access plus

Volume: 24   Issue:
Pp: 1-14
Robert Field, Giulia Pergolizzi, Sakonwan Kuhaudomlarp and Eeshan Kalita
DOI:10.2174/0929866524666170811125109

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Cell-Free Technologies for Proteomics and Protein Engineering open Access plus

Volume: 23   Issue: 9
Pp: 819-827
Hiroyuki Ohashi and Etsuko Miyamoto-Sato
DOI:10.2174/0929866523666160613200304

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The Influence of Ionizing Radiation on Exosome Composition, Secretion and Intercellular Communication open Access plus

Volume: 23   Issue: 7
Pp: 656-663
Karol Jelonek, Piotr Widlak and Monika Pietrowska
DOI:10.2174/0929866523666160427105138

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Kinetics for Zinc Ion Induced Sepia Pharaonis Arginine Kinase Inactivation and Aggregation open Access plus

Volume: 23   Issue: 6
Pp: 508-517
Yue-Xiu Si, Jinhyuk Lee, Juan-Ge Cheng, Shang-Jun Yin, Yong-Doo Park, Guo-Ying Qian and Xia-Min Jiang
DOI:10.2174/0929866523666160331144049

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Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems open Access plus

Volume: 23   Issue: 3
Pp: 273-282
Kevin Loutherback, Giovanni Birarda, Liang Chen and Hoi-Ying N. Holman
DOI:10.2174/0929866523666160106154035

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The Relationship between B-cell Epitope and Mimotope Sequences open Access plus

Volume: 23   Issue: 2
Pp: 132-141
Chunhua Zhang, Yunyun Li, Weina Tang, Zhiguo Zhou, Pingping Sun and Zhiqiang Ma
DOI:10.2174/0929866523666151230124538

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Exploring Interaction of TNF and Orthopoxviral CrmB Protein by Surface Plasmon Resonance and Free Energy Calculation open Access plus

Volume: 21   Issue: 12
Pp: 1273-1281
Nikita V. Ivanisenko, Tatiana V. Tregubchak, Olga V. Saik, Vladimir A. Ivanisenko and Sergei N. Shchelkunov
DOI:10.2174/0929866521666140805125322

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Bioinformatic Screening of Autoimmune Disease Genes and Protein Structure Prediction with FAMS for Drug Discovery open Access plus

Volume: 21   Issue: 8
Pp: 828-839
Shigeharu Ishida, Hideaki Umeyama, Mitsuo Iwadate and Y-h. Taguchi
DOI:10.2174/09298665113209990052

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Protein-protein Interaction Network Prediction by Using Rigid-Body Docking Tools: Application to Bacterial Chemotaxis open Access plus

Volume: 21   Issue: 8
Pp: 790-798
Yuri Matsuzaki, Masahito Ohue, Nobuyuki Uchikoga and Yutaka Akiyama
DOI:10.2174/09298665113209990066

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MEGADOCK: An All-to-All Protein-Protein Interaction Prediction System Using Tertiary Structure Data open Access plus

Volume: 21   Issue: 8
Pp: 766-778
Masahito Ohue, Yuri Matsuzaki, Nobuyuki Uchikoga, Takashi Ishida and Yutaka Akiyama
DOI:10.2174/09298665113209990050

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pH-dependent Activities and Structural Stability of Loop-2-anchoring Helix of RadA Recombinase from Methanococcus voltae open Access plus

Volume: 21   Issue: 7
Pp: 679-687
D. E. C. S. Rao and Yu Luo
DOI:10.2174/0929866521666140320103512

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Heat Shock Protein 40-Gok1 Isolation from Toxoplasma gondii RH Strain open Access plus

Volume: 20   Issue: 12
Pp: 1294-1301
Kübra A. Coskun, Aykut Özgür, Begüm Otag, Mesut Mungan and Yusuf Tutar
DOI:10.2174/092986652012131112113608

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Prediction of Cancer Rescue p53 Mutants In Silico Using Naïve Bayes Learning Methodology open Access plus

Volume: 20   Issue: 11
Pp: 1280-1291
R. Geetha Ramani and Shomona Gracia Jacob
DOI:10.2174/09298665113209990046

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Aqueous Microwave-Assisted Solid-Phase Peptide Synthesis Using Fmoc Strategy. II. Racemization Studies and Water Based Synthesis of Cysteine- Containing Peptides open Access plus

Volume: 20   Issue: 10
Pp: 1122-1128
Keiko Hojo, Natsuki Shinozaki, Asaki Hara, Mare Onishi, Yoshinobu Fukumori and Hideki Ichikawa
DOI:10.2174/0929866511320100006

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Novel Inhibitory Activity for Serine Protease Inhibitor Kazal Type-3 (Spink3) on Human Recombinant Kallikreins open Access plus

Volume: 20   Issue: 10
Pp: 1098-1107
Diego Magno Assis, Lucia Zalazar, Maria Aparecida Juliano, Rosana De Castro and Andreina Cesari
DOI:10.2174/0929866511320100003

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The Anti-fibrotic Hormone Relaxin is not Reno-protective, Despite Being Active, in an Experimental Model of Type 1 Diabetes open Access plus

Volume: 20   Issue: 9
Pp: 1029-1038
Su Ee Wong, Chrishan S. Samuel, Darren J. Kelly, Yuan Zhang, Gavin J. Becker and Tim D. Hewitson
DOI:10.2174/0929866511320090009

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Structure-Based Prediction of Domain-Peptide Binding Affinity by Dissecting Residue Interaction Profile at Complex Interface: A Case Study on CAL PDZ Domain open Access plus

Volume: 20   Issue: 9
Pp: 1018-1028
Rongzhong Jin, Yili Ma, Lifeng Qin and Zhong Ni
DOI:10.2174/0929866511320090008

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Amyloid Fiber Formation by Synthetic Peptides Derived from the Sequence of the Protein CsgA of Escherichia coli open Access plus

Volume: 20   Issue: 8
Pp: 942-946
Pierre Lembre, Charlotte Vendrely and Patrick Di Martino
DOI:10.2174/0929866511320080012

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W-F Substitutions in Apomyoglobin Increase the Local Flexibility of the N-terminal Region Causing Amyloid Aggregation: A H/D Exchange Study open Access plus

Volume: 20   Issue: 8
Pp: 898-904
Giuseppe Infusini, Clara Iannuzzi, Silvia Vilasi, Rosa Maritato, Leila Birolo, Daniela Pagnozzi, Piero Pucci, Gaetano Irace and Ivana Sirangelo
DOI:10.2174/0929866511320080006

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Prediction of Essential Proteins in Prokaryotes by Incorporating Various Physico-chemical Features into the General form of Chou’s Pseudo Amino Acid Composition open Access plus

Volume: 20   Issue: 7
Pp: 781-795
Aditya Narayan Sarangi, Mohtashim Lohani and Rakesh Aggarwal
DOI:10.2174/0929866511320070008

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Sequence-specific 1H-NMR Assignment and Determination of the Secondary Structure of Hainantoxin-III from the Spider Ornithoctonus hainana open Access plus

Volume: 20   Issue: 7
Pp: 761-766
Zhonghua Liu, Qi Zhu, Weijun Hu and Songping Liang
DOI:10.2174/0929866511320070005

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Invertebrate FMRFamide Related Peptides open Access plus

Volume: 20   Issue: 6
Pp: 647-670
Kevin G. Krajniak
DOI:10.2174/0929866511320060005

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The Expression and Induction of Heat Shock Proteins in Molluscs open Access plus

Volume: 20   Issue: 5
Pp: 602-606
Dongwu Liu and Zhiwei Chen
DOI:10.2174/0929866511320050014

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Characterization and Decolorization Applicability of Xerogel Matrix Immobilized Manganese Peroxidase Produced from Trametes versicolor IBL-04 open Access plus

Volume: 20   Issue: 5
Pp: 591-600
Hafiz Muhammad Nasir Iqbal and Muhammad Asgher
DOI:10.2174/0929866511320050013

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Type I Interferons: Ancient Peptides with Still Under-Discovered Anti-Cancer Properties open Access plus

Volume: 20   Issue: 4
Pp: 412-423
Michele Caraglia, Alessandra Dicitore, Monica Marra, Sara Castiglioni, Luca Persani, Pasquale Sperlongano, Pierosandro Tagliaferri, Alberto Abbruzzese and Giovanni Vitale
DOI:10.2174/0929866511320040005

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Red Blood Cell-Encapsulated L-Asparaginase: Potential Therapy of Patients with Asparagine Synthetase Deficient Acute Myeloid Leukemia open Access plus

Volume: 20   Issue: 4
Pp: 392-402
Vaidehi Agrawal, Jung Hee Woo, Gautham Borthakur, Hagop Kantarjian and Arthur E. Frankel
DOI:10.2174/0929866511320040003

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A Sequence-based Approach for Predicting Protein Disordered Regions open Access plus

Volume: 20   Issue: 3
Pp: 243-248
Tao Huang, Zhi-Song He, Wei-Ren Cui, Yu-Dong Cai, Xiao-He Shi, Le-Le Hu and Kuo-Chen Chou
DOI:10.2174/0929866511320030002

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Predicting Antibacterial Peptides by the Concept of Chou’s Pseudo-amino Acid Composition and Machine Learning Methods open Access plus

Volume: 20   Issue: 2
Pp: 180-186
Maede Khosravian, Fateme Kazemi Faramarzi, Majid Mohammad Beigi, Mandana Behbahani and Hassan Mohabatkar
DOI:10.2174/0929866511320020009

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Identification of a Novel Antifungal Peptide with Chitin-Binding Property from Marine Metagenome open Access plus

Volume: 19   Issue: 12
Pp: 1289-1296
Muthuirulan Pushpanathan, Jeyaprakash Rajendhran, Sathyanarayanan Jayashree, Balakrishnan Sundarakrishnan, Seetharaman Jayachandran and Paramasamy Gunasekaran
DOI:10.2174/092986612803521620

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Predicting the Metabolic Pathways of Small Molecules Based on Their Physicochemical Properties open Access plus

Volume: 19   Issue: 12
Pp: 1250-1256
Chun-Rong Peng, Wen-Cong Lu, Bing Niu, Min-Jie Li, Xiao-YanYang and Mi-Lin Wu
DOI:10.2174/092986612803521585

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Predicting Viral Protein Subcellular Localization with Chou's Pseudo Amino Acid Composition and Imbalance-Weighted Multi-Label K-Nearest Neighbor Algorithm open Access plus

Volume: 19   Issue: 11
Pp: 1163-1169
Jun-Zhe Cao, Wen-Qi Liu and Hong Gu
DOI:10.2174/092986612803216999

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Incorporating Secondary Features into the General form of Chou's PseAAC for Predicting Protein Structural Class open Access plus

Volume: 19   Issue: 11
Pp: 1133-1138
Bo Liao, Qilin Xiang and Dachao Li
DOI:10.2174/092986612803217051

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Hydropathic Self-Organized Criticality: A Magic Wand for Protein Physics open Access plus

Volume: 19   Issue: 10
Pp: 1089-1093
J.C. Phillips
DOI:10.2174/092986612802762741

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pH-sensitive Self-associations of the N-terminal Domain of NBCe1-A Suggest a Compact Conformation under Acidic Intracellular Conditions open Access plus

Volume: 19   Issue: 10
Pp: 1054-1063
Harindarpal S. Gill
DOI:10.2174/092986612802762642

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Resuscitation-promoting Factors (Rpf): In Search of Inhibitors open Access plus

Volume: 19   Issue: 10
Pp: 1026-1034
Arseny S. Kaprelyants, Galina V. Mukamolova, Alessia Ruggiero, Vadim A. Makarov, Galina R. Demina, Margarita O. Shleeva, Vasilii D. Potapov and Pavel A. Shramko
DOI:10.2174/092986612802762723

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Secreted Nucleobindin-2 Inhibits 3T3-L1 Adipocyte Differentiation open Access plus

Volume: 19   Issue: 9
Pp: 997-1004
Yuko Tagaya, Aya Osaki, Atsuko Miura, Shuichi Okada, Kihachi Ohshima, Koshi Hashimoto, Masanobu Yamada, Tetsurou Satoh, Hiroyuki Shimizu and Masatomo Mori
DOI:10.2174/092986612802084546

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Predicting Protein Solubility by the General Form of Chou’s Pseudo Amino Acid Composition: Approached from Chaos Game Representation and Fractal Dimension open Access plus

Volume: 19   Issue: 9
Pp: 940-948
Xiao-Hui Niu, Xue-Hai Hu, Feng Shi and Jing-Bo Xia
DOI:10.2174/092986612802084492

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Prediction of Human Genes’ Regulatory Functions Based on Proteinprotein Interaction Network open Access plus

Volume: 19   Issue: 9
Pp: 910-916
Peng Gao, Qing-Ping Wang, Lei Chen and Tao Huang
DOI:10.2174/092986612802084528

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Identifying GPCRs and their Types with Chou’s Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix open Access plus

Volume: 19   Issue: 8
Pp: 890-903
Zia-ur-Rehman and Asifullah Khan
DOI:10.2174/092986612801619589

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Effect of the Compatible Solute Ectoine on the Stability of the Membrane Proteins open Access plus

Volume: 19   Issue: 8
Pp: 791-794
Arpita Roychoudhury, Dieter Haussinger and Filipp Oesterhelt
DOI:10.2174/092986612801619570

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Enhanced Crystallizability by Protein Engineering Approaches: A General Overview open Access plus

Volume: 19   Issue: 7
Pp: 732-742
Alessia Ruggiero, Giovanni Smaldone, Flavia Squeglia and Rita Berisio
DOI:10.2174/092986612800793172

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Bioactive Peptides from Marine Organisms: A Short Overview open Access plus

Volume: 19   Issue: 7
Pp: 700-707
Fernando Lazcano-Perez, Sergio A. Roman-Gonzalez, Nuria Sanchez-Puig and Roberto Arreguin- Espinosa
DOI:10.2174/092986612800793208

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Comparison of the Neutrophil Proteome in Trauma Patients and Normal Controls open Access plus

Volume: 19   Issue: 6
Pp: 663-672
Liz M.B. Teles, Elaine N. Aquino, Anne C.D. Neves, Carlos H.S. Garcia, Peter Roepstorff, Belchor Fontes, Mariana S. Castro and Wagner Fontes
DOI:10.2174/092986612800493977

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Using Protein-protein Interaction Network Information to Predict the Subcellular Locations of Proteins in Budding Yeast open Access plus

Volume: 19   Issue: 6
Pp: 644-651
Le-Le Hu, Kai-Yan Feng, Yu-Dong Cai and Kuo-Chen Chou
DOI:10.2174/092986612800494066

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Mechanism of Action and Relationship Between Structure and Biological Activity of Ctx-Ha: A New Ceratotoxin-like Peptide from Hypsiboas albopunctatus open Access plus

Volume: 19   Issue: 6
Pp: 596-603
Graziely Ferreira Cespedes, Esteban Nicolas Lorenzon, Eduardo Festozo Vicente, Maria Jose Soares Mendes-Giannini, Wagner Fontes, Mariana de Souza Castro and Eduardo Maffud Cilli
DOI:10.2174/092986612800494011

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Predicting Protein-Protein Interactions by Combing Various Sequence- Derived Features into the General Form of Chou’s Pseudo Amino Acid Composition open Access plus

Volume: 19   Issue: 5
Pp: 492-500
Xiao-Wei Zhao, Zhi-Qiang Ma and Ming-Hao Yin
DOI:10.2174/092986612800191080

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Dual-Layer Wavelet SVM for Predicting Protein Structural Class Via the General Form of Chou’s Pseudo Amino Acid Composition open Access plus

Volume: 19   Issue: 4
Pp: 422-429
Chao Chen, Zhi-Bin Shen and Xiao-Yong Zou
DOI:10.2174/092986612799789332

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Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC open Access plus

Volume: 19   Issue: 4
Pp: 411-421
Maqsood Hayat and Asifullah Khan
DOI:10.2174/092986612799789387

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Functional Investigation of Conserved Membrane-Embedded Glutamate Residues in the Proton-Coupled Peptide Transporter YjdL open Access plus

Volume: 19   Issue: 3
Pp: 282-287
Johanne M. Jensen, Heidi A. Ernst, Xiaole Wang, Helle Hald, Amarah C. Ditta, Fouzia Ismat, Moazur Rahman and Osman Mirza
DOI:10.2174/092986612799363109

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Extracellular Sunflower Proteins: Evidence on Non-classical Secretion of a Jacalin-Related Lectin open Access plus

Volume: 19   Issue: 3
Pp: 270-276
Marcela Pinedo, Mariana Regente, Mercedes Elizalde, Ivana Y. Quiroga, Luciana A. Pagnussat, Jesus Jorrin-Novo, Ana Maldonado and Laura de la Canal
DOI:10.2174/092986612799363163

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Co-opting Functions of Cholinesterases in Neural, Limb and Stem Cell Development open Access plus

Volume: 19   Issue: 2
Pp: 155-164
Paul G. Layer
DOI:10.2174/092986612799080266

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Enzymatic Activity and Protein Interactions in Alpha/Beta Hydrolase Fold Proteins: Moonlighting Versus Promiscuity open Access plus

Volume: 19   Issue: 2
Pp: 132-143
Pascale Marchot and Arnaud Chatonnet
DOI:10.2174/092986612799080284

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Studies on an Antifungal Protein and a Chromatographically and Structurally Related Protein Isolated from the Culture Broth of Bacillus amyloliquefaciens open Access plus

Volume: 16   Issue: 11
Pp: 1399-1406
Jack Ho Wong and Tzi Bun Ng
DOI:10.2174/092986609789353718

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Gβγ-Copurified Lipid Kinase Impurity from Sf9 Cells open Access plus

Volume: 16   Issue: 9
Pp: 1053-1056
Aliaksei Shymanets, Mohammad Reza Ahmadian and Bernd Nurnberg
DOI:10.2174/092986609789055340

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Composition and Functions of the Influenza Fusion Peptide open Access plus

Volume: 16   Issue: 7
Pp: 766-778
Karen J. Cross, William A. Langley, Rupert J. Russell, John J. Skehel and David A. Steinhauer
DOI:10.2174/092986609788681715

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Cautionary Tail: The Presence of an N-Terminal Tag on Dynein Light-Chain Roadblock/LC7 Affects Its Interaction with a Functional Partner open Access plus

Volume: 14   Issue: 3
Pp: 265-268
Jikui Song, John L. Markley, Jikui Song and John L. Markley
DOI:10.2174/092986607780090801

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