Generic placeholder image

Current Genomics

Editor-in-Chief

ISSN (Print): 1389-2029
ISSN (Online): 1875-5488

General Research Article

Identification of Two Novel Mutations in the ATM Gene from Patients with Ataxia-Telangiectasia by Whole Exome Sequencing

Author(s): Masoud Heidari, Morteza Soleyman-Nejad, Mohammad H. Taskhiri, Javad Shahpouri, Alireza Isazadeh, Roghayyeh Ahangari, Ali R. Mohamadi, Masoumeh Ebrahimi , Hadi Karimi , Manzar Bolhassani, Zahra Karimi and Mansour Heidari *

Volume 20, Issue 7, 2019

Page: [531 - 534] Pages: 4

DOI: 10.2174/1389202920666191107153734

Price: $65

Abstract

Background: Ataxia telangiectasia (AT) is one of the most common autosomal recessive hereditary ataxia presenting in childhood. The responsible gene for AT designated ATM (AT, mutated) encodes a protein which is involved in cell cycle checkpoints and other responses to genotoxicity. We describe two novel disease-causing mutations in two unrelated Iranian families with Ataxiatelangiectasia.

Methods: The probands including a 6-year-old female and an 18-year-old boy were diagnosed with Ataxia-telangiectasia among two different Iranian families. In this study, Whole-Exome Sequencing (WES) was employed for the detection of genetic changes in probands. The analysis of the cosegregation of the variants with the disease in families was conducted using PCR direct sequencing.

Results: Two novel frameshift mutations, (c.4236_4236del p. Pro1412fs) and (c.8907T>G p. Tyr2969Ter) in the ataxia telangiectasia mutated ATM gene were detected using Whole-Exome Sequencing (WES) in the probands. These mutations were observed in two separate A-T families.

Conclusion: Next-generation sequencing successfully identified the causative mutation in families with ataxia-telangiectasia. These novel mutations in the ATM gene reported in the present study could assist genetic counseling, Preimplantation Genetic Diagnosis (PGD) and prenatal diagnosis (PND) of AT.

Keywords: Ataxia-telangiectasia, mutation detection, whole exome sequencing, protein, probands, frameshift mutations.

« Previous
Graphical Abstract
[1]
Nowak-Wegrzyn, A.; Crawford, T.O.; Winkelstein, J.A.; Carson, K.A.; Lederman, H.M. Immunodeficiency and infections in ataxia-telangiectasia. J. Pediatr., 2004, 144(4), 505-511.
[http://dx.doi.org/10.1016/j.jpeds.2003.12.046] [PMID: 15069401]
[2]
Geoffroy-Perez, B.; Janin, N.; Ossian, K.; Laugé, A.; Croquette, M.F.; Griscelli, C.; Debré, M.; Bressac-de-Paillerets, B.; Aurias, A.; Stoppa-Lyonnet, D.; Andrieu, N. Cancer risk in heterozygotes for ataxia-telangiectasia. Int. J. Cancer, 2001, 93(2), 288-293.
[http://dx.doi.org/10.1002/ijc.1329] [PMID: 11410879]
[3]
Nissenkorn, A.; Levy-Shraga, Y.; Banet-Levi, Y.; Lahad, A.; Sarouk, I.; Modan-Moses, D. Endocrine abnormalities in ataxia telangiectasia: findings from a national cohort. Pediatr. Res., 2016, 79(6), 889-894.
[http://dx.doi.org/10.1038/pr.2016.19] [PMID: 26891003]
[4]
Chun, H.H.; Gatti, R.A. Ataxia-telangiectasia, an evolving phenotype. DNA Repair (Amst.), 2004, 3(8-9), 1187-1196.
[http://dx.doi.org/10.1016/j.dnarep.2004.04.010] [PMID: 15279807]
[5]
Crawford, T.O. Ataxia telangiectasia. Semin. Pediatr. Neurol., 1998, 5(4), 287-294.
[http://dx.doi.org/10.1016/S1071-9091(98)80007-7] [PMID: 9874856]
[6]
Ball, L.G.; Xiao, W. Molecular basis of ataxia telangiectasia and related diseases. Acta Pharmacol. Sin., 2005, 26(8), 897-907.
[http://dx.doi.org/10.1111/j.1745-7254.2005.00165.x] [PMID: 16038621]
[7]
Shiloh, Y. ATM and related protein kinases: Safeguarding genome integrity. Nat. Rev. Cancer, 2003, 3(3), 155-168.
[http://dx.doi.org/10.1038/nrc1011] [PMID: 12612651]
[8]
Derheimer, F.A.; Kastan, M.B. Multiple roles of ATM in monitoring and maintaining DNA integrity. FEBS Lett., 2010, 584(17), 3675-3681.
[http://dx.doi.org/10.1016/j.febslet.2010.05.031] [PMID: 20580718]
[9]
Keimling, M.; Volcic, M.; Csernok, A.; Wieland, B.; Dörk, T.; Wiesmüller, L. Functional characterization connects individual patient mutations in ataxia telangiectasia mutated (ATM) with dysfunction of specific DNA double-strand break-repair signaling pathways. FASEB J., 2011, 25(11), 3849-3860.
[http://dx.doi.org/10.1096/fj.11-185546] [PMID: 21778326]
[10]
Herrup, K. ATM and the epigenetics of the neuronal genome. Mech. Ageing Dev., 2013, 134(10), 434-439.
[http://dx.doi.org/10.1016/j.mad.2013.05.005] [PMID: 23707635]
[11]
Hoche, F.; Seidel, K.; Theis, M.; Vlaho, S.; Schubert, R.; Zielen, S.; Kieslich, M. Neurodegeneration in ataxia telangiectasia: What is new? What is evident? Neuropediatrics, 2012, 43(3), 119-129.
[http://dx.doi.org/10.1055/s-0032-1313915] [PMID: 22614068]
[12]
Davis, M.Y.; Keene, C.D.; Swanson, P.D.; Sheehy, C.; Bird, T.D. Novel mutations in ataxia telangiectasia and AOA2 associated with prolonged survival. J. Neurol. Sci., 2013, 335(1-2), 134-138.
[http://dx.doi.org/10.1016/j.jns.2013.09.014] [PMID: 24090759]
[13]
Hall, J. The Ataxia-telangiectasia mutated gene and breast cancer: gene expression profiles and sequence variants. Cancer Lett., 2005, 227(2), 105-114.
[http://dx.doi.org/10.1016/j.canlet.2004.12.001] [PMID: 16112413]
[14]
Fernandes, N.; Sun, Y.; Chen, S.; Paul, P.; Shaw, R.J.; Cantley, L.C.; Price, B.D. DNA damage-induced association of ATM with its target proteins requires a protein interaction domain in the N terminus of ATM. J. Biol. Chem., 2005, 280(15), 15158-15164.
[http://dx.doi.org/10.1074/jbc.M412065200] [PMID: 15713674]
[15]
Ahmadi, M.; Dehghanifard, A.; Isazadeh, A.; Hajazimian, S.; Mehdizadeh, M.; Rahaei, S.; Hosseini, S.; Kalantari, E. A Novel Homozygous MYO7A Mutation: Case Report. Acta Med. Iran., 2018, 56(5), 348-350.
[16]
Choi, M.; Kipps, T.; Kurzrock, R. ATM mutations in cancer: therapeutic implications. Mol. Cancer Ther., 2016, 15(8), 1781-1791.
[http://dx.doi.org/10.1158/1535-7163.MCT-15-0945] [PMID: 27413114]
[17]
Sandoval, N.; Platzer, M.; Rosenthal, A.; Dörk, T.; Bendix, R.; Skawran, B.; Stuhrmann, M.; Wegner, R.D.; Sperling, K.; Banin, S.; Shiloh, Y.; Baumer, A.; Bernthaler, U.; Sennefelder, H.; Brohm, M.; Weber, B.H.; Schindler, D. Characterization of ATM gene mutations in 66 ataxia telangiectasia families. Hum. Mol. Genet., 1999, 8(1), 69-79.
[http://dx.doi.org/10.1093/hmg/8.1.69] [PMID: 9887333]
[18]
Lavin, M.F. Ataxia-telangiectasia: from a rare disorder to a paradigm for cell signalling and cancer. Nat. Rev. Mol. Cell Biol., 2008, 9(10), 759-769.
[http://dx.doi.org/10.1038/nrm2514] [PMID: 18813293]
[19]
Taylor, A.M.; Metcalfe, J.A.; Thick, J.; Mak, Y.F. Leukemia and lymphoma in ataxia telangiectasia. Blood, 1996, 87(2), 423-438.
[http://dx.doi.org/10.1182/blood.V87.2.423.bloodjournal872423] [PMID: 8555463]
[20]
Taylor, A.M.R.; Harnden, D.G.; Arlett, C.F.; Harcourt, S.A.; Lehmann, A.R.; Stevens, S.; Bridges, B.A. Ataxia telangiectasia: A human mutation with abnormal radiation sensitivity. Nature, 1975, 258(5534), 427-429.
[http://dx.doi.org/10.1038/258427a0] [PMID: 1196376]
[21]
Curry, C.J.; O’Lague, P.; Tsai, J.; Hutchison, H.T.; Jaspers, N.G.; Wara, D.; Gatti, R.A. ATFresno: A phenotype linking ataxia-telangiectasia with the Nijmegen breakage syndrome. Am. J. Hum. Genet., 1989, 45(2), 270-275.
[PMID: 2491181]
[22]
Weber, A.M.; Drobnitzky, N.; Devery, A.M.; Bokobza, S.M.; Adams, R.A.; Maughan, T.S.; Ryan, A.J. Phenotypic consequences of somatic mutations in the ataxia-telangiectasia mutated gene in non-small cell lung cancer. Oncotarget, 2016, 7(38), 60807-60822.
[http://dx.doi.org/10.18632/oncotarget.11845] [PMID: 27602502]
[23]
Stankovic, T.; Kidd, A.M.J.; Sutcliffe, A.; McGuire, G.M.; Robinson, P.; Weber, P.; Bedenham, T.; Bradwell, A.R.; Easton, D.F.; Lennox, G.G.; Haites, N.; Byrd, P.J.; Taylor, A.M. ATM mutations and phenotypes in ataxia-telangiectasia families in the British Isles: expression of mutant ATM and the risk of leukemia, lymphoma, and breast cancer. Am. J. Hum. Genet., 1998, 62(2), 334-345.
[http://dx.doi.org/10.1086/301706] [PMID: 9463314]
[24]
Rothblum-Oviatt, C.; Wright, J.; Lefton-Greif, M.A.; McGrath-Morrow, S.A.; Crawford, T.O.; Lederman, H.M. Ataxia telangiectasia: a review. Orphanet J. Rare Dis., 2016, 11(1), 159.
[http://dx.doi.org/10.1186/s13023-016-0543-7] [PMID: 27884168]
[25]
van Os, N.J.H.; Chessa, L.; Weemaes, C.M.R.; van Deuren, M.; Fiévet, A.; van Gaalen, J.; Mahlaoui, N.; Roeleveld, N.; Schrader, C.; Schindler, D.; Taylor, A.M.R.; Van de Warrenburg, B.P.C.; Dörk, T.; Willemsen, M.A.A.P. Genotype-phenotype correlations in ataxia telangiectasia patients with ATM c.3576G>A and c.8147T>C mutations. J. Med. Genet., 2019, 56(5), 308-316.
[http://dx.doi.org/10.1136/jmedgenet-2018-105635] [PMID: 30819809]

Rights & Permissions Print Cite
© 2024 Bentham Science Publishers | Privacy Policy