Generic placeholder image

Letters in Drug Design & Discovery

Editor-in-Chief

ISSN (Print): 1570-1808
ISSN (Online): 1875-628X

Research Article

Recursive Partitioning Analysis and Anti-Tubercular Screening of 3- Aminopyrazine-2-Carbohydrazide Derivatives

Author(s): Pankaj Miniyar*, Anand Mahajan, Dattatray Anuse, Ashish Kumar, Mahesh Barmade, Dhiman Sarkar, Manisha Arkile and Vijay Khedkar

Volume 16, Issue 11, 2019

Page: [1264 - 1275] Pages: 12

DOI: 10.2174/1570180816666190329222636

Price: $65

Abstract

Background: Treating tuberculosis is a challenge due to the development of drug resistance. Hence, it is imperative to develop novel leads having high potency and efficacy to curb drug resistance.

Methods: The present research work is focused on microwave-assisted synthesis of novel twenty-six 3-amino-N’-benzylidenepyrazine-2-carbohydrazide derivatives (3a-z), where, lyophilization technique was used for isolation of the major intermediate, 3-aminopyrazin-2-carbohydrazide. All synthesized compounds were subjected for anti-tubercular screening against Mycobacterium tuberculosis H37Ra by using XTT Reduction Menadione Assay (XRMA) protocol.

Results: Out of 26 synthesized compounds, four N’-substitutedbenzaldehyde-3-amino-pyrazine-2- carbohydrazide derivatives viz. 3i, 3j 3v and 3z showed significant activity against M. tuberculosis H37Ra. The compounds 3i, 3j, 3v and 3z showed 99, 98, 92 and 87 % inhibition respectively as compared to 94% inhibition shown by the standard drug rifampicin. The MIC and IC50 values were in the range of 24.3-110 and 5.9-20.8 µg/ml respectively.

Conclusion: A classification model called Recursive Partitioning (RP) based on binary Quantitative Structure-Activity Relationship (QSAR) was derived for the establishment of structure-activity relationship (SAR). The predictions derived on the basis of RP model were found to be in agreement with anti-tubercular screening data.

Keywords: 3-aminopyrazine, carbohydrazide, anti-tubercular activity, lyophilization, QSAR, recursive partitioning.

Graphical Abstract
[1]
WHO Global Tuberculosis Report. http:www.who.int/tb/publication/global_report.pdf (Accessed December 12, 2017).
[2]
Torres, E.; Moreno, E.; Ancizu, S.; Barea, C.; Galiano, S.; Aldana, I.; Monge, A.; Pérez-Silanes, S. New 1,4-di-N-oxide-quinoxaline-2-ylmethylene isonicotinic acid hydrazide derivatives as anti-Mycobacterium tuberculosis agents. Bioorg. Med. Chem. Lett., 2011, 21(12), 3699-3703.
[http://dx.doi.org/10.1016/j.bmcl.2011.04.072] [PMID: 21570839]
[3]
Telvekar, V.N.; Belubbi, A.; Bairwa, V.K.; Satardekar, K. Novel N′-benzylidene benzofuran-3-carbohydrazide derivatives as anti-tubercular and antifungal agents. Bioorg. Med. Chem. Lett., 2012, 22(6), 2343-2346.
[http://dx.doi.org/10.1016/j.bmcl.2012.01.067] [PMID: 22365752]
[4]
Escuyer, V.E.; Lety, M.A.; Torrelles, J.B.; Khoo, K.H.; Tang, J.B.; Rithner, C.D.; Frehel, C.; McNeil, M.R.; Brennan, P.J.; Chatterjee, D. The role of the embA and embB gene products in the biosynthesis of the terminal hexaarabinofuranosyl motif of Mycobacterium smegmatis arabinogalactan. J. Biol. Chem., 2001, 276(52), 48854-48862.
[http://dx.doi.org/10.1074/jbc.M102272200] [PMID: 11677227]
[5]
Ghosh, S.; Tiwari, P.; Pandey, S.; Misra, A.K.; Chaturvedi, V.; Gaikwad, A.; Bhatnagar, S.; Sinha, S. Synthesis and evaluation of antitubercular activity of glycosyl thio- and sulfonyl acetamide derivatives. Bioorg. Med. Chem. Lett., 2008, 18(14), 4002-4005.
[http://dx.doi.org/10.1016/j.bmcl.2008.06.004] [PMID: 18579372]
[6]
Vergara, F.M.; Lima, C.H.; Henriques, Md.; Candéa, A.L.; Lourenço, M.C. Ferreira, Mde.L.; Kaiser, C.R.; de Souza, M.V. Synthesis and antimycobacterial activity of N′-[(E)-(monosubstituted-benzylidene)]-2-pyrazinecarbohydrazide derivatives. Eur. J. Med. Chem., 2009, 44(12), 4954-4959.
[http://dx.doi.org/10.1016/j.ejmech.2009.08.009] [PMID: 19765866]
[7]
Desai, K.G.; Desai, K.R. Green route for the heterocyclization of 2-mercaptobenzimidazole into beta-lactum segment derivatives containing -CONH- bridge with benzimidazole: Screening in vitro antimicrobial activity with various microorganisms. Bioorg. Med. Chem., 2006, 14(24), 8271-8279.
[http://dx.doi.org/10.1016/j.bmc.2006.09.017] [PMID: 17035035]
[8]
Zitko, J.; Jampilek, J.; Dobrovolny, ´.L.; Svobodova, M.; Kunes, J. Dolezˇal, M. Synthesis and antimicobacterial evaluation of N-substituted 3-aminopyrazine-2,5-dicarbonitrilrs. Bioorg. Med. Chem. Lett., 2012, 22, 1598-1601.
[http://dx.doi.org/10.1016/j.bmcl.2011.12.129] [PMID: 22281187]
[9]
Miniyar, P.B.; Makhija, S.J.; Mokale, S.N. Design and synthesis of 5-methylpyrazine-2-carbohydrazide derivatives: A new anti-tubercular scaffold. Arab. J. Chem., 2017, 10, 41-46.
[http://dx.doi.org/10.1016/j.arabjc.2013.04.001]
[10]
Zitko, J.; Paterová, P.; Kubíček, V.; Mandíková, J.; Trejtnar, F.; Kuneš, J.; Doležal, M. Synthesis and antimycobacterial evaluation of pyrazinamide derivatives with benzylamino substitution. Bioorg. Med. Chem. Lett., 2013, 23(2), 476-479.
[http://dx.doi.org/10.1016/j.bmcl.2012.11.052] [PMID: 23237840]
[11]
Singh, U.; Akhtar, S.; Mishra, A.; Sarkar, D. A novel screening method based on menadione mediated rapid reduction of tetrazolium salt for testing of anti-mycobacterial agents. J. Microbiol. Methods, 2011, 84(2), 202-207.
[http://dx.doi.org/10.1016/j.mimet.2010.11.013] [PMID: 21129420]
[12]
Blower, P.; Fligner, M.; Verducci, J.; Bjoraker, J. On combining recursive partitioning and simulated annealing to detect groups of biologically active compounds. J. Chem. Inf. Comput. Sci., 2002, 42(2), 393-404.
[http://dx.doi.org/10.1021/ci0101049] [PMID: 11911709]
[13]
Strobl, C.; Malley, J.; Tutz, G. An introduction to recursive partitioning: Rationale, application, and characteristics of classification and regression trees, bagging, and random forests. Psychol. Methods, 2009, 14(4), 323-348.
[http://dx.doi.org/10.1037/a0016973] [PMID: 19968396]
[14]
Young, S.S.; Hawkins, D.M. Using recursive partitioning analysis to evaluate compound selection methods. Methods Mol. Biol., 2004, 275, 317-334.
[http://dx.doi.org/10.1385/1-59259-802-1:317] [PMID: 15141119]
[15]
Rusinko, A., III; Young, S.S.; Drewry, D.H.; Gerritz, S.W. Optimization of focused chemical libraries using recursive partitioning. Comb. Chem. High Throughput Screen., 2002, 5(2), 125-133.
[http://dx.doi.org/10.2174/1386207024607383] [PMID: 11966421]
[16]
Manvar, A.; Khedkar, V.; Patel, J.; Vora, V.; Dodia, N.; Patel, G.; Coutinho, E.; Shah, A. Synthesis and binary QSAR study of anti-tubercular quinolylhydrazides. Bioorg. Med. Chem. Lett., 2013, 23(17), 4896-4902.
[http://dx.doi.org/10.1016/j.bmcl.2013.06.076] [PMID: 23876988]

Rights & Permissions Print Cite
© 2024 Bentham Science Publishers | Privacy Policy