Structural Fragments in Protein Model Refinement

Author(s): S. M. Hollup, W. R. Taylor, I. Jonassen.

Journal Name: Protein & Peptide Letters

Volume 15 , Issue 9 , 2008

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Abstract:

We survey a method that uses patterns of residue packing in known protein structures to refine structural models. The method can be used to refine models that include only one coordinate point per residue (Cα) and is not dependent on homology. We demonstrate that the method improves both decoy and CASP7 target models.

Keywords: protein structure prediction, model refinement

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Article Details

VOLUME: 15
ISSUE: 9
Year: 2008
Page: [964 - 971]
Pages: 8
DOI: 10.2174/092986608785849263
Price: $65

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