Current Computer-Aided Drug Design

Subhash C. Basak
Departments of Chemistry, Biochemistry & Molecular Biology University of Minnesota Duluth
Duluth, MN 55811
USA

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Designing New β-Lactams: Implications from Their Targets, Resistance Factors and Synthesizing Enzymes

Author(s): Kian-Sim Goo, Tiow-Suan Sim.

Abstract:

Penicillins and cephalosporins are β-lactam antibiotics widely used to treat bacterial infectious diseases. They mainly target the cell wall biosynthesis pathway to inhibit bacterial growth. The targets, known as penicillin-binding proteins, are enzymes involved in the polymerization of glycan chains, cross-linking them during bacterial cell wall formation. However, the dispensation of these antibiotics has been concomitant with increasing incidence of resistance to them. Reportedly, this is due to the evolvement of two resistance mechanisms in the bacterial pathogens. One is the production of β-lactamases that cleave the β-lactam rings of penicillin and cephalosporin antibiotics, rendering them ineffective against the pathogens. Another is the modification of the targets, resulting in their inability to bind β-lactam antibiotics. Nevertheless, β-lactam antibiotics remain clinically relevant due to their high target specificity in bacteria and low toxicity to humans. Thus, to overcome the continuing emergence of resistance in pathogens, more efficacious β- lactams have to be developed and cephalosporins are often preferred over penicillins due to two alkyl sites in the cephalosporin core structure amenable for modification. Transformed β-lactams are expected to have improved antimicrobial spectra and pharmacokinetics. This is illustrated by the development of two cephalosporins, namely ceftobiprole and ceftaroline, which have shown good antimicrobial activities and are currently undergoing clinical trials. This review will discuss computer-aided studies of three enzymes closely related to cephalosporins: (1) its synthesizing enzyme, deacetoxycephalosporin C synthase, (2) its targets, the penicillin-binding proteins, and (3) its degrading enzyme, the β-lactamases, and their implications in the development of new cephalosporins.

Keywords: β-lactam, penicillin, cephalosporin, penicillin-binding proteins, β-lactamases, deacetoxycephalosporin C synthase, PBP1b, ponB, PBP4, dacB, Escherichia coli, PBP5, dacA, PBP6, dacC, Haemophilus influenzae, Neisseria gonorrhoeae, PBP2, ftsI, PBP1a, pbpA, Streptococcus pneumoniae, PBP2b, Moenomycin, Faropenem, Flomox (cefapeme pivoxil hydrochloride), Mimetic peptide penicillin, Mimetic peptide cephalosporin, Boronic acid inhibitor, Mercaptoethanol, Glycerol, CMV, FMZ, Glycerol, sulphate ion, Biapenem, zinc ion, Tebipenem, zinc ion, 2-(N-morpholino)-ethanesulfonic acid, barium ion, Cefotaxime, 1,2-ethanediol, chloride ion, zinc ion, Lactivicin, chloride ion, sulphate ion, Nickel ion, Cefotaxime, sulphate ion, Zinc ion, Chloride ion, PBP2x, pvpx, Staphylococcus aureus, mecA, Bacillus subtilis, PBP4a, Lactam Biosynthetic Pathway, L-aminoadipic acid, L-cysteine, L-valine, tripeptide, Laminoadipyl-L-cysteinyl-D-valine, isopenicillin N synthase (IPNS), deacetoxycephalosporin C (DAOC), HXDXnH, azlocillin, piperacillin, mezlocillin, non-lactamase-producing staphylococci, sodium dodecyl sulphate-polyacrylamide gel electrophoresis, SXN motif, K213, KTG motif, S110, SHV-1, SHV-2, PER-1, CTX-M-9, CTX-M-14, CTX-M-27, PSE-4, Bacillus licheniformis, Citrobacter sedlakii, Serratia marcescens, Fluoribacter gormanii, Enterobacter cloacae, Acinetobacter baumannii, Pseudomonas aeruginosa, Klebsiella pneumoniae

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Article Details

VOLUME: 7
ISSUE: 1
Year: 2011
Page: [53 - 80]
Pages: 28
DOI: 10.2174/157340911793743538