Computational Methods for Calculation of Ligand-Binding Affinity

Author(s): Walter Filgueira de Azevedo Jr., Raquel Dias.

Journal Name: Current Drug Targets

Volume 9 , Issue 12 , 2008

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Abstract:

Precise computational methods to determine ligand-binding affinity are needed to accelerate the discovery of new drugs. Assessing protein-ligand interaction is of great importance for virtual screening initiatives. The affinity may be computational evaluated using scoring functions involving terms for intermolecular hydrogen bonds, contact surface, hydrophobic contacts, electrostatic interactions and others. Empirical scoring functions have been developed to evaluate ligand-binding affinity very rapidly. In addition to predict affinity, these scoring functions have been employed to identify the best results obtained from docking simulations. This review describes several computational methods, employed to estimate ligand-binding affinity and discuss their development and main applications.

Keywords: Empirical scoring functions, virtual screening, protein-ligand, docking

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Article Details

VOLUME: 9
ISSUE: 12
Year: 2008
Page: [1031 - 1039]
Pages: 9
DOI: 10.2174/138945008786949405
Price: $58

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