Current Computer Aided-Drug Design

Subhash C. Basak
Departments of Chemistry, Biochemistry & Molecular Biology University of Minnesota Duluth
Duluth, MN 55811


Hybrid Usage of Computational Tools in Drug Synthesis

Author(s): Canan Atilgan and Viktorya Aviyente

Affiliation: Faculty of Engineering and Natural Sciences, Sabanci University, Orhanli, 34956, Tuzla, Istanbul,Turkey.


We describe several computational methodologies used in aiding the chemical synthesis of drugs. We first summarize quantum mechanical approaches that weigh thermodynamical and kinetic factors in selecting the possible pathways during synthesis. The two major problems encountered in computational approaches are the efficient sampling of the conformational space and the incorporation of solvent effect into the system of interest. Thus, conformational search methodologies of small to medium sized molecules, with emphasis on cyclic molecules, are reviewed. Also, the analysis of the solvent effect on the synthesis of drug molecules and yield, using continuum methodologies as well as molecular dynamics, is discussed. How results from these studies are in turn fed back into detailed quantum mechanical calculations with supermolecules of solvent and reaction site are outlined. It is shown that the usage of several computational techniques hand-in-hand provides a plethora of information that may be utilized during the actual synthesis of drug molecules.

Keywords: Conformational analysis, molecular dynamics, quantum chemical computations, rational drug design, solvent effect, macrolide antibiotics

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Article Details

Page: [149 - 159]
Pages: 11
DOI: 10.2174/157340907780809480
Price: $58